MANIFEST.in
README.md
setup.cfg
setup.py
examples/dominant_trio.ped
examples/multi_allele_example.vcf
examples/multi_family.ped
examples/recessive_trio.ped
examples/small_1000G.vcf
examples/small_1000G.vcf.gz
examples/small_1000G.vcf.gz.tbi
examples/small_1000G_CADD.tsv.gz
examples/small_1000G_CADD.tsv.gz.tbi
examples/small_CADD.tsv.gz
examples/small_CADD.tsv.gz.tbi
examples/small_dbNSFP.txt.gz
examples/small_dbNSFP.txt.gz.tbi
examples/small_vep.vcf
examples/test_phased_compounds.vcf
examples/test_vcf.vcf
examples/test_vcf_regions.vcf
examples/test_vcf_regions_models.vcf
examples/test_vcf_regions_models_scored.vcf
genmod/__init__.py
genmod/log.py
genmod.egg-info/PKG-INFO
genmod.egg-info/SOURCES.txt
genmod.egg-info/dependency_links.txt
genmod.egg-info/entry_points.txt
genmod.egg-info/requires.txt
genmod.egg-info/top_level.txt
genmod/annotate_models/__init__.py
genmod/annotate_models/fix_variant.py
genmod/annotate_models/genetic_models.py
genmod/annotate_models/make_haploblocks.py
genmod/annotate_models/model_score.py
genmod/annotate_models/variant_annotator.py
genmod/annotate_models/models/__init__.py
genmod/annotate_models/models/compound_model.py
genmod/annotate_models/models/dominant_model.py
genmod/annotate_models/models/recessive_model.py
genmod/annotate_models/models/x_models.py
genmod/annotate_regions/__init__.py
genmod/annotate_regions/get_features.py
genmod/annotate_regions/parse_annotations.py
genmod/annotate_variants/__init__.py
genmod/annotate_variants/add_annotations.py
genmod/annotate_variants/annotate.py
genmod/annotate_variants/read_tabix_files.py
genmod/annotations/__init__.py
genmod/annotations/ensembl_genes_37.txt.gz
genmod/annotations/ensembl_genes_38.txt.gz
genmod/commands/__init__.py
genmod/commands/analyze.py
genmod/commands/annotate_models.py
genmod/commands/annotate_variant.py
genmod/commands/base.py
genmod/commands/filter_variants.py
genmod/commands/genmod_sort.py
genmod/commands/score_compounds.py
genmod/commands/score_variants.py
genmod/commands/summarize_variants.py
genmod/commands/utils.py
genmod/configs/genmod_test.v1.5.ini
genmod/configs/rank_model_cmms_v1.7.ini
genmod/configs/rank_model_cmms_v1.9.ini
genmod/errors/__init__.py
genmod/errors/warning.py
genmod/score_variants/__init__.py
genmod/score_variants/check_plugins.py
genmod/score_variants/compound_scorer.py
genmod/score_variants/config_parser.py
genmod/score_variants/score_function.py
genmod/score_variants/score_variant.py
genmod/utils/__init__.py
genmod/utils/check_individuals.py
genmod/utils/get_batches.py
genmod/utils/get_features.py
genmod/utils/get_priority.py
genmod/utils/is_number.py
genmod/utils/pair_generator.py
genmod/utils/variant_printer.py
genmod/vcf_tools/__init__.py
genmod/vcf_tools/add_metadata.py
genmod/vcf_tools/add_variant_information.py
genmod/vcf_tools/check_info_header.py
genmod/vcf_tools/genotype.py
genmod/vcf_tools/get_genotypes.py
genmod/vcf_tools/header_parser.py
genmod/vcf_tools/parse_variant.py
genmod/vcf_tools/print_headers.py
genmod/vcf_tools/print_variants.py
genmod/vcf_tools/sort_variants.py