"""Basic Cellular Analysis Functions."""

from .art_of_tsne import tsne
from .balanced_pca import (
    ReproduciblePCA,
    balanced_pca,
    get_pc_centers,
    log_scale,
    significant_pc_test,
)
from .ClusterMerging import ClusterMerge, PairwiseDMGCriterion
from .ConsensusClustering import ConsensusClustering, select_confusion_pairs
from .dmg import PairwiseDMG, one_vs_rest_dmg
from .feature_selection.feature_enrichment import cluster_enriched_features
from .lsi import LSI, lsi
from .mcad import (
    binarize_matrix,
    filter_regions,
    remove_black_list_region,
    remove_chromosomes,
)
from .pvclust import Dendrogram
