.gitignore
LICENSE
README.md
pyproject.toml
.github/workflows/ci-cd.yml
assets/lai_dataset_level.png
assets/logo.png
benchmark/README.md
benchmark/__init__.py
benchmark/benchmark.png
benchmark/conftest.py
benchmark/plot.py
benchmark/read_bed.py
benchmark/read_pgen.py
benchmark/read_vcf.py
benchmark/run.sh
benchmark/utils.py
demos/LAI_visualization.ipynb
demos/PhenObj.ipynb
demos/SNPObj.ipynb
demos/SNP_PCA.ipynb
demos/admixture_mapping.ipynb
demos/mdPCA_maasMDS.ipynb
snputils/__init__.py
snputils.egg-info/PKG-INFO
snputils.egg-info/SOURCES.txt
snputils.egg-info/dependency_links.txt
snputils.egg-info/entry_points.txt
snputils.egg-info/requires.txt
snputils.egg-info/top_level.txt
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snputils/ancestry/__init__.py
snputils/ancestry/genobj/__init__.py
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snputils/ancestry/genobj/local.py
snputils/ancestry/genobj/wide.py
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snputils/ancestry/io/local/__init__.py
snputils/ancestry/io/local/others.py
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snputils/ancestry/io/local/read/auto.py
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snputils/ancestry/io/wide/write/admixture.py
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snputils/datasets/__init__.py
snputils/datasets/load_dataset.py
snputils/phenotype/__init__.py
snputils/phenotype/genobj/__init__.py
snputils/phenotype/genobj/multi_phenobj.py
snputils/phenotype/genobj/ukb_phenobj.py
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snputils/phenotype/io/read/__init__.py
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snputils/phenotype/io/read/multiPhenTabular.py
snputils/phenotype/io/read/ukbPhenReader.py
snputils/processing/__init__.py
snputils/processing/maasmds.py
snputils/processing/mdpca.py
snputils/processing/pca.py
snputils/processing/_utils/common.py
snputils/processing/_utils/gen_tools.py
snputils/processing/_utils/iterative_svd.py
snputils/processing/_utils/mds_distance.py
snputils/processing/_utils/solver.py
snputils/simulation/__init__.py
snputils/simulation/simulator_cli.py
snputils/simulation/pyadmix/__init__.py
snputils/simulation/pytorch/__init__.py
snputils/simulation/simulator/__init__.py
snputils/simulation/simulator/simulator.py
snputils/snp/__init__.py
snputils/snp/genobj/__init__.py
snputils/snp/genobj/snpobj.py
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snputils/snp/io/read/functional.py
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snputils/snp/io/read/__test__/test_read_filter.py
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snputils/snp/io/write/__init__.py
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snputils/stats/__init__.py
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snputils/visualization/admixture.py
snputils/visualization/admixture_manhattan_plot.py
snputils/visualization/admixture_viz.py
snputils/visualization/lai.py
snputils/visualization/scatter_plot.py