biopython==1.85
fuzzywuzzy==0.18.0
matplotlib==3.10.7
pandas==2.3.3
python-Levenshtein==0.27.3
pyyaml==6.0.3
pysam==0.23.3
scipy==1.15.3
seaborn==0.13.2
tabulate==0.9.0
tqdm==4.67.1
typer==0.20.0
mappy==2.30
gradio==5.49.1

[dev]
pytest==9.0.0
black==25.9.0
ruff==0.14.4

[gui]
gradio==5.49.1
