CHANGELOG.md
LICENSE
MANIFEST.in
README.rst
pyproject.toml
requirements.txt
requirements_dev.txt
setup.py
src/strvcf_annotator/__init__.py
src/strvcf_annotator/api.py
src/strvcf_annotator/cli.py
src/strvcf_annotator.egg-info/PKG-INFO
src/strvcf_annotator.egg-info/SOURCES.txt
src/strvcf_annotator.egg-info/dependency_links.txt
src/strvcf_annotator.egg-info/entry_points.txt
src/strvcf_annotator.egg-info/not-zip-safe
src/strvcf_annotator.egg-info/requires.txt
src/strvcf_annotator.egg-info/top_level.txt
src/strvcf_annotator/core/__init__.py
src/strvcf_annotator/core/annotation.py
src/strvcf_annotator/core/repeat_utils.py
src/strvcf_annotator/core/str_reference.py
src/strvcf_annotator/core/vcf_processor.py
src/strvcf_annotator/parsers/__init__.py
src/strvcf_annotator/parsers/base.py
src/strvcf_annotator/parsers/generic.py
src/strvcf_annotator/utils/__init__.py
src/strvcf_annotator/utils/validation.py
src/strvcf_annotator/utils/vcf_utils.py
tests/test_integration.py
tests/test_parsers.py
tests/test_performance.py
tests/test_repeat_utils.py
tests/test_str_reference.py
tests/test_validation.py
tests/data/GRCh38_repeats.bed
tests/data/TCGA-DC-6682.vcf
tests/data/mutec2_indel.vcf.gz
tests/data/pindel_header.vcf
tests/data/test.vcf.gz