.codecov.yml
.coveragerc
.travis.yml
Dockerfile
LICENSE
MANIFEST.in
README.rst
build.sh
create_and_build_container.sh
requirements.txt
setup.py
tox.ini
docs/Makefile
docs/source/cli.rst
docs/source/conf.py
docs/source/constants.rst
docs/source/curation.rst
docs/source/index.rst
docs/source/license.rst
docs/source/manager.rst
docs/source/models.rst
docs/source/repositories.rst
docs/source/utils.rst
docs/source/visualization.rst
docs/source/web.rst
src/bin/bootstrap.sh
src/bin/load_data.sh
src/compath/__init__.py
src/compath/__main__.py
src/compath/cli.py
src/compath/constants.py
src/compath/forms.py
src/compath/manager.py
src/compath/models.py
src/compath/utils.py
src/compath/web.py
src/compath.egg-info/PKG-INFO
src/compath.egg-info/SOURCES.txt
src/compath.egg-info/dependency_links.txt
src/compath.egg-info/entry_points.txt
src/compath.egg-info/requires.txt
src/compath.egg-info/top_level.txt
src/compath/curation/__init__.py
src/compath/curation/hierarchies.py
src/compath/curation/parser.py
src/compath/curation/utils.py
src/compath/static/css/clustergrammer.css
src/compath/static/css/graph_explorer.css
src/compath/static/css/nav.css
src/compath/static/img/EFPIA_logo.jpg
src/compath/static/img/aetionomy_logo.png
src/compath/static/img/compath-blackbg-logo-1000px.png
src/compath/static/img/compath-logo-1000px.png
src/compath/static/img/compath-logo-100px.png
src/compath/static/img/eu_logo.png
src/compath/static/img/imi_logo.png
src/compath/static/img/scai_logo.svg
src/compath/static/img/gif/loading.gif
src/compath/static/js/graph_controller.js
src/compath/static/js/overlap_controller.js
src/compath/static/js/pathway_controller.js
src/compath/static/js/pathway_knowledge_graph_controller.js
src/compath/static/js/dependencies/clustergrammer.js
src/compath/static/js/dependencies/venn.js
src/compath/static/json/cy-style.json
src/compath/static/json/kegg_clustergrammer.json
src/compath/static/json/reactome_clustergrammer.json
src/compath/static/json/wikipathways_clustergrammer.json
src/compath/static/json/all/kegg_reactome_10.json
src/compath/static/json/all/kegg_reactome_100.json
src/compath/static/json/all/kegg_reactome_20.json
src/compath/static/json/all/kegg_reactome_30.json
src/compath/static/json/all/kegg_reactome_40.json
src/compath/static/json/all/kegg_reactome_50.json
src/compath/static/json/all/kegg_reactome_60.json
src/compath/static/json/all/kegg_reactome_70.json
src/compath/static/json/all/kegg_reactome_80.json
src/compath/static/json/all/kegg_reactome_90.json
src/compath/static/json/all/kegg_wikipathways_10.json
src/compath/static/json/all/kegg_wikipathways_100.json
src/compath/static/json/all/kegg_wikipathways_20.json
src/compath/static/json/all/kegg_wikipathways_30.json
src/compath/static/json/all/kegg_wikipathways_40.json
src/compath/static/json/all/kegg_wikipathways_50.json
src/compath/static/json/all/kegg_wikipathways_60.json
src/compath/static/json/all/kegg_wikipathways_70.json
src/compath/static/json/all/kegg_wikipathways_80.json
src/compath/static/json/all/kegg_wikipathways_90.json
src/compath/static/json/all/reactome_wikipathways_10.json
src/compath/static/json/all/reactome_wikipathways_100.json
src/compath/static/json/all/reactome_wikipathways_20.json
src/compath/static/json/all/reactome_wikipathways_30.json
src/compath/static/json/all/reactome_wikipathways_40.json
src/compath/static/json/all/reactome_wikipathways_50.json
src/compath/static/json/all/reactome_wikipathways_60.json
src/compath/static/json/all/reactome_wikipathways_70.json
src/compath/static/json/all/reactome_wikipathways_80.json
src/compath/static/json/all/reactome_wikipathways_90.json
src/compath/static/json/kegg/kegg_10.json
src/compath/static/json/kegg/kegg_100.json
src/compath/static/json/kegg/kegg_20.json
src/compath/static/json/kegg/kegg_30.json
src/compath/static/json/kegg/kegg_40.json
src/compath/static/json/kegg/kegg_50.json
src/compath/static/json/kegg/kegg_60.json
src/compath/static/json/kegg/kegg_70.json
src/compath/static/json/kegg/kegg_80.json
src/compath/static/json/kegg/kegg_90.json
src/compath/static/json/kegg/kegg_reactome_10.json
src/compath/static/json/reactome/reactome_10.json
src/compath/static/json/reactome/reactome_100.json
src/compath/static/json/reactome/reactome_20.json
src/compath/static/json/reactome/reactome_30.json
src/compath/static/json/reactome/reactome_40.json
src/compath/static/json/reactome/reactome_50.json
src/compath/static/json/reactome/reactome_60.json
src/compath/static/json/reactome/reactome_70.json
src/compath/static/json/reactome/reactome_80.json
src/compath/static/json/reactome/reactome_90.json
src/compath/static/json/wikipathways/wikipathways_10.json
src/compath/static/json/wikipathways/wikipathways_100.json
src/compath/static/json/wikipathways/wikipathways_20.json
src/compath/static/json/wikipathways/wikipathways_30.json
src/compath/static/json/wikipathways/wikipathways_40.json
src/compath/static/json/wikipathways/wikipathways_50.json
src/compath/static/json/wikipathways/wikipathways_60.json
src/compath/static/json/wikipathways/wikipathways_70.json
src/compath/static/json/wikipathways/wikipathways_80.json
src/compath/static/json/wikipathways/wikipathways_90.json
src/compath/static/resources/excel/kegg_gene_sets.xlsx
src/compath/static/resources/excel/msig_gene_sets.xlsx
src/compath/static/resources/excel/reactome_gene_sets.xlsx
src/compath/static/resources/excel/wikipathways_gene_sets.xlsx
src/compath/static/resources/txt/geneset_example.txt
src/compath/templates/base.html
src/compath/templates/curation_protocol.html
src/compath/templates/home.html
src/compath/templates/macros.html
src/compath/templates/nav.html
src/compath/templates/overview.html
src/compath/templates/query.html
src/compath/templates/similarity.html
src/compath/templates/admin/config.html
src/compath/templates/admin/users.html
src/compath/templates/curation/catalog.html
src/compath/templates/curation/create_mapping.html
src/compath/templates/dependencies/clustergrammer.html
src/compath/templates/dependencies/clustergrammer_styles.html
src/compath/templates/dependencies/common.html
src/compath/templates/dependencies/cytoscape.html
src/compath/templates/dependencies/datatables.html
src/compath/templates/dependencies/slider.html
src/compath/templates/dependencies/venn.html
src/compath/templates/meta/about.html
src/compath/templates/meta/footer.html
src/compath/templates/meta/imprint.html
src/compath/templates/meta/terms_conditions.html
src/compath/templates/models/pathway.html
src/compath/templates/security/login_user.html
src/compath/templates/security/register_user.html
src/compath/templates/user/activity.html
src/compath/templates/visualization/database_distributions.html
src/compath/templates/visualization/enrichment_results.html
src/compath/templates/visualization/pathway_neighbourhood.html
src/compath/templates/visualization/similarity_network.html
src/compath/templates/visualization/simulation.html
src/compath/templates/visualization/clustergrammer/kegg_overlap.html
src/compath/templates/visualization/clustergrammer/reactome_overlap.html
src/compath/templates/visualization/clustergrammer/wikipathways_overlap.html
src/compath/templates/visualization/dendrogram/dendrogram.html
src/compath/templates/visualization/dendrogram/legend.html
src/compath/templates/visualization/venn_diagram/pathway_overlap.html
src/compath/templates/visualization/venn_diagram/venn_diagram_view.html
src/compath/views/__init__.py
src/compath/views/analysis_service.py
src/compath/views/api_service.py
src/compath/views/curation_service.py
src/compath/views/db_service.py
src/compath/views/main_service.py
src/compath/views/model_service.py
src/compath/visualization/__init__.py
src/compath/visualization/cytoscape.py
src/compath/visualization/d3_dendrogram.py
src/compath/visualization/venn_diagram.py
tests/__init__.py
tests/constants.py
tests/test_cascade.py
tests/test_curation.py
tests/test_mapping.py
tests/test_utils.py
tests/test_voting.py