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.gitattributes
.gitignore
.pre-commit-config.yaml
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CITATION.cff
LICENSE
MANIFEST.in
README.md
pyproject.toml
.github/dependabot.yml
.github/workflows/bundle.yml
.github/workflows/ci.yaml
.github/workflows/deploy_release.yml
doc/.gitignore
doc/Makefile
doc/changelog.rst
doc/citation.rst
doc/conf.py
doc/contributing.rst
doc/faq.rst
doc/glossary.rst
doc/index.rst
doc/installation.rst
doc/license.rst
doc/make.bat
doc/usage.rst
doc/gfx/ccompass_gui_sample_data_screenshot.png
src/ccompass/FDP.py
src/ccompass/MOA.py
src/ccompass/MOP.py
src/ccompass/RP.py
src/ccompass/TPP.py
src/ccompass/__init__.py
src/ccompass/__main__.py
src/ccompass/_gui_utils.py
src/ccompass/_utils.py
src/ccompass/about_dialog.py
src/ccompass/class_manager_dialog.py
src/ccompass/classification_model.py
src/ccompass/core.py
src/ccompass/fractionation_parameters_dialog.py
src/ccompass/main_gui.py
src/ccompass/marker_correlation_dialog.py
src/ccompass/marker_parameters_dialog.py
src/ccompass/marker_profiles_dialog.py
src/ccompass/settings_dialog.py
src/ccompass/total_proteome_parameters_dialog.py
src/ccompass/training_parameters_dialog.py
src/ccompass/visualize.py
src/ccompass.egg-info/PKG-INFO
src/ccompass.egg-info/SOURCES.txt
src/ccompass.egg-info/dependency_links.txt
src/ccompass.egg-info/entry_points.txt
src/ccompass.egg-info/requires.txt
src/ccompass.egg-info/top_level.txt
src/ccompass/_testing/__init__.py
src/ccompass/_testing/synthetic_data.py
tests/test_full_analysis.py
tests/test_misc.py
tests/test_sample_data.py
tests/test_session_model.py
tests/test_visualize.py