.codeclimate.yml
.codecov.yml
.coveragerc
.readthedocs.yml
.travis.yml
AUTHORS.rst
CHANGELOG.rst
CONTRIBUTING.rst
LICENSE
MANIFEST.in
README.rst
requirements.txt
setup.cfg
setup.py
tox.ini
docs/Makefile
docs/source/conf.py
docs/source/constants.rst
docs/source/cookbook.rst
docs/source/datamodel.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/io.rst
docs/source/logging.rst
docs/source/manager.rst
docs/source/overview.rst
docs/source/parser.rst
docs/source/roadmap.rst
docs/source/technology.rst
docs/source/troubleshooting.rst
docs/source/utilities.rst
src/PyBEL.egg-info/PKG-INFO
src/PyBEL.egg-info/SOURCES.txt
src/PyBEL.egg-info/dependency_links.txt
src/PyBEL.egg-info/entry_points.txt
src/PyBEL.egg-info/requires.txt
src/PyBEL.egg-info/top_level.txt
src/pybel/__init__.py
src/pybel/__main__.py
src/pybel/canonicalize.py
src/pybel/cli.py
src/pybel/constants.py
src/pybel/exceptions.py
src/pybel/exthook.py
src/pybel/graph.py
src/pybel/utils.py
src/pybel/ext/__init__.py
src/pybel/io/__init__.py
src/pybel/io/cx.py
src/pybel/io/extras.py
src/pybel/io/gpickle.py
src/pybel/io/io_exceptions.py
src/pybel/io/line_utils.py
src/pybel/io/lines.py
src/pybel/io/neo4j.py
src/pybel/io/nodelink.py
src/pybel/io/utils.py
src/pybel/manager/__init__.py
src/pybel/manager/base_cache.py
src/pybel/manager/cache.py
src/pybel/manager/database_io.py
src/pybel/manager/defaults.py
src/pybel/manager/models.py
src/pybel/manager/utils.py
src/pybel/parser/__init__.py
src/pybel/parser/baseparser.py
src/pybel/parser/language.py
src/pybel/parser/parse_bel.py
src/pybel/parser/parse_control.py
src/pybel/parser/parse_exceptions.py
src/pybel/parser/parse_identifier.py
src/pybel/parser/parse_metadata.py
src/pybel/parser/utils.py
src/pybel/parser/modifiers/__init__.py
src/pybel/parser/modifiers/fragment.py
src/pybel/parser/modifiers/fusion.py
src/pybel/parser/modifiers/gene_modification.py
src/pybel/parser/modifiers/gene_substitution.py
src/pybel/parser/modifiers/location.py
src/pybel/parser/modifiers/protein_modification.py
src/pybel/parser/modifiers/protein_substitution.py
src/pybel/parser/modifiers/truncation.py
src/pybel/parser/modifiers/variant.py
tests/__init__.py
tests/constants.py
tests/test_cli.py
tests/test_extensions.py
tests/test_import.py
tests/test_manager_definitions.py
tests/test_manager_graph.py
tests/test_manager_mapper.py
tests/test_misordered.py
tests/test_owl.py
tests/test_parse_bel.py
tests/test_parse_control.py
tests/test_parse_identifier.py
tests/test_parse_metadata.py
tests/test_parse_utils.py
tests/test_upgrade.py
tests/test_utils.py
tests/bel/isolated.bel
tests/bel/misordered.bel
tests/bel/slushy.bel
tests/bel/test_annotations.bel
tests/bel/test_bel.bel
tests/bel/test_bel_owl_extension.bel
tests/bel/thorough.bel
tests/belanno/cell-line.belanno
tests/belanno/mesh-diseases.belanno
tests/belanno/mesh-endocrine-system.belanno
tests/belanno/species-taxonomy-id.belanno
tests/belanno/test_an_1.belanno
tests/beleq/disease-ontology.beleq
tests/beleq/mesh-diseases.beleq
tests/belns/chebi.belns
tests/belns/disease-ontology.belns
tests/belns/go-biological-process.belns
tests/belns/go-cellular-component.belns
tests/belns/hgnc-human-genes.belns
tests/belns/mesh-diseases.belns
tests/belns/test_nocache.belns
tests/belns/test_ns_1.belns
tests/belns/test_ns_1_updated.belns
tests/belns/test_ns_2.belns
tests/owl/ado.owl
tests/owl/pizza_onto.owl
tests/owl/wine.owl