README.md
setup.py
copoly/1-blocks.py
copoly/__init__.py
copoly/aggregates-tails.py
copoly/asa.py
copoly/average.py
copoly/average_aggregation_number.py
copoly/block_boundaries.py
copoly/calculate_average_rg.py
copoly/calculate_block_lengths.py
copoly/calculate_globular_parameters.py
copoly/clone_system.py
copoly/convert_chain_atomtypes.py
copoly/number_of_aggregates.py
copoly/plot_areas.py
copoly/plot_average_rg.py
copoly/plot_averaged_globular_parameters.py
copoly/plot_cloned_aggregation_numbers.py
copoly/plot_cloned_aggregation_numbers_cuts.py
copoly/plot_scaling.py
copoly/sizes_of_aggregates.py
copoly/sizes_of_aggregates_in_chains.py
copoly/split_aggregates.py
mdlearn/__init__.py
mdlearn/diagram_viz.py
mdlearn/diagram_viz_multiaxis.py
mdlearn/diagram_viz_old.py
mdlearn/diagram_viz_old2.py
mdlearn/diagram_viz_points.py
mdlearn/label_prop.py
mdlearn/legacy_label_prop.py
mdlearn/legacy_tune_performance.py
mdlearn/legacy_tune_performance2.py
mdlearn/optimize_pid.py
mdlearn/parzen_search.py
mdlearn/pid_fit.py
mdlearn/pid_fit_legacy.py
mdlearn/run_cyclic.py
mdlearn/run_mc.py
mdlearn/rw_metadata.py
mdlearn/sequences_encoding.py
mdlearn/split_pdb.py
mdlearn/tune_performance.py
microplastic/__init__.py
microplastic/c_ratio.py
microplastic/check_degradation_times.py
microplastic/check_degree_of_modification.py
microplastic/create_sequences_from_volgin.py
microplastic/fillcube.py
microplastic/fit_decay.py
microplastic/generate_seq.py
microplastic/modify_seq.py
microplastic/modify_seq_extended.py
microplastic/modify_seq_terminal.py
microplastic/print_rcm.py
mouse2/__init__.py
mouse2/aggregates.py
mouse2/backbone_twist.py
mouse2/bond_autocorrelations.py
mouse2/create_configuration.py
mouse2/data2pdb.py
mouse2/lamellar_alignment.py
mouse2/local_alignment.py
mouse2.egg-info/PKG-INFO
mouse2.egg-info/SOURCES.txt
mouse2.egg-info/dependency_links.txt
mouse2.egg-info/entry_points.txt
mouse2.egg-info/requires.txt
mouse2.egg-info/top_level.txt
mouse2/examples/3h5g_analysis.py
mouse2/examples/6ock_analysis.py
mouse2/examples/__init__.py
mouse2/lib/__init__.py
mouse2/lib/aggregation.py
mouse2/lib/lamellar_orientation.py
mouse2/lib/neighbor.py
mouse2/lib/utilities.py
mouse2/lib/vector_orientational_ordering.py
mouse2/tests/__init__.py
mouse2/tests/test_functions.py