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LICENSE
MANIFEST.in
README.md
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ALLCools/__main__.py
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ALLCools/_allc_to_bigwig_new.py
ALLCools/_allc_to_region_count.py
ALLCools/_bam_to_allc.py
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ALLCools/_merge_allc.py
ALLCools/_open.py
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ALLCools/table_to_allc.py
ALLCools/utilities.py
ALLCools/abc/__init__.py
ALLCools/abc/abc_score.py
ALLCools/clustering/ClusterMerging.py
ALLCools/clustering/ConsensusClustering.py
ALLCools/clustering/__init__.py
ALLCools/clustering/art_of_tsne.py
ALLCools/clustering/balanced_pca.py
ALLCools/clustering/dmg.py
ALLCools/clustering/incremental_pca.py
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ALLCools/clustering/pvclust.py
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ALLCools/clustering/doublets/coverage_doublets.py
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ALLCools/dmr/call_dms.py
ALLCools/dmr/parse_methylpy.py
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ALLCools/sandbox/igv/Track.py
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ALLCools/sandbox/motif/cmotif.py
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docs/CONDUCT.md
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docs/README.md
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docs/allcools/references.bib
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test/__init__.py
test/test_allc_to_region_count.py
test/test_bam_to_allc.py
test/test_extract_allc.py
test/utilities.py
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