scipy < 1.12
scikit-image == 0.21.0
omicverse
pandas
scanpy
matplotlib
seaborn
scikit-learn
sphinx_autosummary_accessors
sphinx_autodoc_typehints
recommonmark
sphinx_markdown_tables
sphinx_copybutton
nbsphinx
pytest-asyncio>=0.23
IPython
ipywidgets
lifelines
boltons
ctxcore
multiprocess
ktplotspy
leidenalg
datashader
graphtools
igraph
phate
jinja2 == 3.1.2
griffe == 0.26.0
mkdocs == 1.6.1
#mkdocs-jupyter==0.23.0
mkdocs-mermaid2-plugin==1.1.1
mkdocs-jupyter==0.25.1
mkdocs-material==9.1.2
mkdocs-glightbox==0.3.2
mkdocstrings == 0.20.0
mkapi == 4.5.0
mkdocs-gen-files ==0.4.0
mkdocstrings-python ==0.9.0
mkdocs-autorefs==0.4.1
Pygments<2.20
python-dotplot
metatime
tensorboard
mellon
ctxcore
pydeseq2 > 0.3
mkdocs-plotly-plugin==0.1.3
bioservices
tomli
requests
wandb
munch
datasets
openai
mcp
