Metadata-Version: 2.1
Name: mglcmdtools
Version: 0.0.4
Summary: common cmd tools to be used in Python3 scripts. By Guanliang MENG, see https://github.com/linzhi2013/mglcmdtools.
Home-page: https://github.com/linzhi2013/mglcmdtools
Author: Guanliang Meng
Author-email: mengguanliang@foxmail.com
License: UNKNOWN
Description: # mglcmdtools
        
        ## 1 Introduction
        
        `mglcmdtools` is a collection of common cmd tools intended to be used in Python3 scripts. By Guanliang MENG, see https://github.com/linzhi2013/mglcmdtools. 
        
        
        ## 2 Installation
        
            pip install mglcmdtools
        
        
        ## 3 Usage
            
            from mglcmdtools import rm_and_mkdir, runcmd, longStrings_not_match_shortStrings, read_fastaLike, read_fastaLike2
        
        
            rm_and_mkdir('Newdirectory')
        
            rm_and_mkdir('Newdirectory', force=True)
        
        
            cmd = 'ls -lhtr /'
            runcmd(cmd)
        
            runcmd(cmd, verbose=True)
        
        
            Long_strings = ['AABB', 'CCDD', 'EEFF']
            Short_strings = ['AA', 'EE']
            longStrings_not_match_shortStrings(Long_strings, Short_strings)
            # ['CCDD']
        
        
        `seq.fa` file has following content:
        
            >scaffold512 Locus_1222_0 8.3 LINEAR length=1717 score=20.785
            COX2    2   649 45  643 +   4
            COX3    897 1691    18  784 +   4
            >C7676 18.0 length=1633 score=19.113
            DNA afd
            COX1    34  1580    12  1530    -   4
            >C7536 14.0 length=1185 score=13.529
            CYTB    178 1185    25  1008    +   4
            >scaffold619 Locus_1559_0 5.0 LINEAR length=803 score=3.515
            ND4 27  764 515 1185    +   2
            >scaffold367 Locus_808_0 4.6 LINEAR length=652 score=2.296
            ATP6    1   306 324 620 -   4
            AAA adfjkaj
        
        
        Then read each record:
        
            for rec in read_fastaLike('seq.fa'):
                print('seqid line:', rec[0])
                print('sequence line 1:', rec[1])
        
        
        ## 4 Author
        Guanliang MENG
        
        ## 5 Citation
        Currently I have no plan to publish `mglcmdtools`.
        
        
        
        
        
        
        
        
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Programming Language :: Python :: 3
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
Requires-Python: >=3
Description-Content-Type: text/markdown
