06f9ce095e218b21cd125beff69532683e1d99c3 6fc9efb72fb963530a95fb4fec4bc2d62b0dd310 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1715597706 +0100	checkout: moving from main to bda_dev
6fc9efb72fb963530a95fb4fec4bc2d62b0dd310 4c0de9ae4f067b44ea17823c324e40f60f56c5ed michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1715602483 +0100	commit: Profiles -> ProfilerGauss
4c0de9ae4f067b44ea17823c324e40f60f56c5ed 06f9ce095e218b21cd125beff69532683e1d99c3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1715605297 +0100	checkout: moving from bda_dev to main
06f9ce095e218b21cd125beff69532683e1d99c3 06f9ce095e218b21cd125beff69532683e1d99c3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1715605418 +0100	checkout: moving from main to mg/ppts_reader
06f9ce095e218b21cd125beff69532683e1d99c3 5409c23c2534611528a281a42abfd44e71013574 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716219298 +0100	commit: ppts reader added
5409c23c2534611528a281a42abfd44e71013574 82c6ee94182358e9dbe614fe2af3575fc4bb47b4 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716219758 +0100	commit: filtered data includes data quantities which don't have a defined filter
82c6ee94182358e9dbe614fe2af3575fc4bb47b4 4873db28a2bd6332ce5c03541326dc12e89db754 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716220370 +0100	commit: pre-commit
4873db28a2bd6332ce5c03541326dc12e89db754 925d001d47f5cafa540a591330f6190235cf39a9 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716220547 +0100	commit: pre-commit
925d001d47f5cafa540a591330f6190235cf39a9 cc18d2fee9ac7dec2bafc4c5cdd29d445a7c12fb michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716221355 +0100	commit: bin_data_in_time now returns binned data
cc18d2fee9ac7dec2bafc4c5cdd29d445a7c12fb 452a328ceca1513f6eda2a9b6e72f69f36b1f908 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716221377 +0100	commit: type hints
452a328ceca1513f6eda2a9b6e72f69f36b1f908 382dac70c4ed7c632c64c99e7bdc4e5d9c7aaf48 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716221568 +0100	commit: black formatting
382dac70c4ed7c632c64c99e7bdc4e5d9c7aaf48 9b5f62876a7c61b857b3e95724855cb6794545aa michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716280647 +0100	pull origin: Fast-forward
9b5f62876a7c61b857b3e95724855cb6794545aa 42a8cb4ff5cdbb96bbce4eb13c05ef3b3bd2514c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716280874 +0100	commit: ppts and ts tests added
42a8cb4ff5cdbb96bbce4eb13c05ef3b3bd2514c 247019b21b2190f2d951ef85a2fc2c802f39a6e9 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716280995 +0100	commit: linting
247019b21b2190f2d951ef85a2fc2c802f39a6e9 5d0c18fd6e029eedd4616f17f4bad3415bcb8b4f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716282047 +0100	commit: linting
5d0c18fd6e029eedd4616f17f4bad3415bcb8b4f 8d1238cb0b6fb62ffb8c39f9f06a8a6cf4c0fa5a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716283069 +0100	commit: removing try except: is there an application where this is useful?
8d1238cb0b6fb62ffb8c39f9f06a8a6cf4c0fa5a efb4e9efb59857f6b8b24d9a045e13101294d0c6 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716283113 +0100	commit: rshift added to quantities
efb4e9efb59857f6b8b24d9a045e13101294d0c6 1d90a55149203af19d9eeca15cb3024e5e45e504 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716285122 +0100	commit: pre-commit
1d90a55149203af19d9eeca15cb3024e5e45e504 fcf9aeb0704d11c111c3167b0cbf21764fb1029f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716285176 +0100	checkout: moving from mg/ppts_reader to master
fcf9aeb0704d11c111c3167b0cbf21764fb1029f 06f9ce095e218b21cd125beff69532683e1d99c3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716285190 +0100	checkout: moving from master to main
06f9ce095e218b21cd125beff69532683e1d99c3 1d90a55149203af19d9eeca15cb3024e5e45e504 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716285364 +0100	checkout: moving from main to mg/ppts_reader
1d90a55149203af19d9eeca15cb3024e5e45e504 d1b54be44c7b3972c61a27255d76e7cb03667855 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716286008 +0100	commit: reimplemented try except
d1b54be44c7b3972c61a27255d76e7cb03667855 06f9ce095e218b21cd125beff69532683e1d99c3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716286037 +0100	checkout: moving from mg/ppts_reader to main
06f9ce095e218b21cd125beff69532683e1d99c3 06f9ce095e218b21cd125beff69532683e1d99c3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716286051 +0100	checkout: moving from main to mg/efit_rshift_vector
06f9ce095e218b21cd125beff69532683e1d99c3 63259b6dae1336e61f7b155ac81efc2b05dfbaf8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716293016 +0100	commit: r_shift/z_shift are now DataArrays with time coord
63259b6dae1336e61f7b155ac81efc2b05dfbaf8 50a2220421ee60ffe01ddc958fe67982307bf303 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716293297 +0100	commit: pre-commit
50a2220421ee60ffe01ddc958fe67982307bf303 cda4f4313ae0cbc7956f0de931692b0e28fca670 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716296572 +0100	commit: removing until time dependent R_shift is fixed in workflow
cda4f4313ae0cbc7956f0de931692b0e28fca670 92fc08162867fccd11ac76f884392a9533ac023a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716297128 +0100	commit: updating with time dependent R_shift
92fc08162867fccd11ac76f884392a9533ac023a 1e09bcda4e25b2f5cac6e4436b2594965b616402 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716297168 +0100	commit: added missing an interpolation
1e09bcda4e25b2f5cac6e4436b2594965b616402 79d92a5e9dde5568b732d7be1170fb744ed08b3a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716297232 +0100	commit: black formatting
79d92a5e9dde5568b732d7be1170fb744ed08b3a d1b54be44c7b3972c61a27255d76e7cb03667855 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716301283 +0100	checkout: moving from mg/efit_rshift_vector to mg/ppts_reader
d1b54be44c7b3972c61a27255d76e7cb03667855 2546d79203e20dd36d9fe8206cc2b8b6498eefdb michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716304235 +0100	commit: added coords to ppts data
2546d79203e20dd36d9fe8206cc2b8b6498eefdb 38e6f61b331eddc1f423c2fb5218ca0e9ba32296 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716304267 +0100	commit: R_midplane -> rpos
38e6f61b331eddc1f423c2fb5218ca0e9ba32296 872ffdbb58fa210b184b4a67a57df1df61151f03 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716304587 +0100	commit: black formatting
872ffdbb58fa210b184b4a67a57df1df61151f03 414a11e49e6b221977afd60ac7aa6dd296432958 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716372468 +0100	commit: assigning coords to ppts data
414a11e49e6b221977afd60ac7aa6dd296432958 06f9ce095e218b21cd125beff69532683e1d99c3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716373117 +0100	checkout: moving from mg/ppts_reader to main
06f9ce095e218b21cd125beff69532683e1d99c3 675738e35c792de96762d5931ab4a383b694ff58 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716373123 +0100	pull origin: Fast-forward
675738e35c792de96762d5931ab4a383b694ff58 ed592a9f0ec481ecbd72e2e0d206b7e19ccf1ac4 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716373781 +0100	checkout: moving from main to bda
ed592a9f0ec481ecbd72e2e0d206b7e19ccf1ac4 fadbfde32676928d45edcc5b101d59bb54903e3d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716373947 +0100	commit (merge): merging with main
fadbfde32676928d45edcc5b101d59bb54903e3d 4c0de9ae4f067b44ea17823c324e40f60f56c5ed michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716381930 +0100	checkout: moving from bda to bda_dev
4c0de9ae4f067b44ea17823c324e40f60f56c5ed d31102932aaeafce874297d4e9e2319ffce55b20 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716390020 +0100	commit: stashing changes
d31102932aaeafce874297d4e9e2319ffce55b20 675738e35c792de96762d5931ab4a383b694ff58 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716390039 +0100	checkout: moving from bda_dev to main
675738e35c792de96762d5931ab4a383b694ff58 d31102932aaeafce874297d4e9e2319ffce55b20 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716451968 +0100	checkout: moving from main to bda_dev
d31102932aaeafce874297d4e9e2319ffce55b20 31fec81c9b484450ae7e7fbae6bbdbf0da61423d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716452481 +0100	commit: stashing
31fec81c9b484450ae7e7fbae6bbdbf0da61423d 675738e35c792de96762d5931ab4a383b694ff58 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716452487 +0100	checkout: moving from bda_dev to main
675738e35c792de96762d5931ab4a383b694ff58 267c5eb636ee5f028e7aece519cfe8d8970bcea8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716456804 +0100	commit: moved data methods of read_st40 to functions
267c5eb636ee5f028e7aece519cfe8d8970bcea8 34805832af17aa555919afb6fdeffae32e694f31 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716456897 +0100	commit: moved data methods of read_st40 to functions
34805832af17aa555919afb6fdeffae32e694f31 34805832af17aa555919afb6fdeffae32e694f31 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716456933 +0100	checkout: moving from main to mg/reader_coord_filters
34805832af17aa555919afb6fdeffae32e694f31 34805832af17aa555919afb6fdeffae32e694f31 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716456942 +0100	checkout: moving from mg/reader_coord_filters to main
34805832af17aa555919afb6fdeffae32e694f31 267c5eb636ee5f028e7aece519cfe8d8970bcea8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716457185 +0100	reset: moving to HEAD~1
267c5eb636ee5f028e7aece519cfe8d8970bcea8 675738e35c792de96762d5931ab4a383b694ff58 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716457192 +0100	reset: moving to HEAD~1
675738e35c792de96762d5931ab4a383b694ff58 34805832af17aa555919afb6fdeffae32e694f31 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716457209 +0100	checkout: moving from main to mg/reader_coord_filters
34805832af17aa555919afb6fdeffae32e694f31 ac3c0b8c84a74ff19017b0e9da341410a24eafd1 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716462102 +0100	commit: Filtering by co-ordinate values is now available
ac3c0b8c84a74ff19017b0e9da341410a24eafd1 ed4ea0c6ef6c8054720c3043ba5478ac852b8488 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716466477 +0100	commit: linting
ed4ea0c6ef6c8054720c3043ba5478ac852b8488 99ebadd2e6639970c3047ddf7d347417576bdb9e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716466518 +0100	commit: linting
99ebadd2e6639970c3047ddf7d347417576bdb9e 79d92a5e9dde5568b732d7be1170fb744ed08b3a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716466681 +0100	checkout: moving from mg/reader_coord_filters to mg/efit_rshift_vector
79d92a5e9dde5568b732d7be1170fb744ed08b3a 32913c45d30757e00ce851a9347321c88341db88 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716467524 +0100	commit: new typing added FloatOrDataArray <- Union[float, xr.DataArray]
32913c45d30757e00ce851a9347321c88341db88 9371caea5b2869f7b096f72c8a36af84f5c00133 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716467729 +0100	commit: black formatting
9371caea5b2869f7b096f72c8a36af84f5c00133 a19e2df5225dc51be3f3687d8db1ba9fcaeab6a0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716467873 +0100	commit: black formatting
a19e2df5225dc51be3f3687d8db1ba9fcaeab6a0 31fec81c9b484450ae7e7fbae6bbdbf0da61423d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716468408 +0100	checkout: moving from mg/efit_rshift_vector to bda_dev
31fec81c9b484450ae7e7fbae6bbdbf0da61423d 9e81f1e1ca394512dd0c2a6dda3ae7caa0ea7e82 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716469928 +0100	commit: comments
9e81f1e1ca394512dd0c2a6dda3ae7caa0ea7e82 be52c1212eb5fed137a3d2942eb4c211112da974 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716469966 +0100	commit: bad imports
be52c1212eb5fed137a3d2942eb4c211112da974 345581e40a9a9ef63e70f1b8b4d6ece71cd6f26b michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716470054 +0100	commit: comments
345581e40a9a9ef63e70f1b8b4d6ece71cd6f26b 168a82b17078a6c4066be6afcba0a128ea0bf344 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716470274 +0100	commit: wrong ln_prior being called
168a82b17078a6c4066be6afcba0a128ea0bf344 07ea67f7a7ad439ac9aeecb806aefc207c7ce62d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716476635 +0100	commit: comment
07ea67f7a7ad439ac9aeecb806aefc207c7ce62d 5d08fc16e33603d8e2c917b04532843ef099e2b3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716477077 +0100	commit: 'phantoms'->'phantom'
5d08fc16e33603d8e2c917b04532843ef099e2b3 399485361ddd7a02cb99dbd9a6336452a613b391 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716477848 +0100	commit: stashing
399485361ddd7a02cb99dbd9a6336452a613b391 99ebadd2e6639970c3047ddf7d347417576bdb9e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716477856 +0100	checkout: moving from bda_dev to mg/reader_coord_filters
99ebadd2e6639970c3047ddf7d347417576bdb9e b06a1f02d8e6c2adaa159644529ef88b2187ec48 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716477892 +0100	commit: fixing xrcs filter default
b06a1f02d8e6c2adaa159644529ef88b2187ec48 399485361ddd7a02cb99dbd9a6336452a613b391 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716477907 +0100	checkout: moving from mg/reader_coord_filters to bda_dev
399485361ddd7a02cb99dbd9a6336452a613b391 a247268707bf3e509e41beb1bb5bbdbe0146ec1d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716539728 +0100	commit: stashing
a247268707bf3e509e41beb1bb5bbdbe0146ec1d 2bb274fbdc3d8160af263acf99d31247956c260c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716539857 +0100	checkout: moving from bda_dev to marcosertoli/ppts_inconsistencies
2bb274fbdc3d8160af263acf99d31247956c260c 294998f52a97873d9b73e8542bd1fc98f3258dcb michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716542258 +0100	commit: using numpy.isclose to handle floating point comparisons
294998f52a97873d9b73e8542bd1fc98f3258dcb a247268707bf3e509e41beb1bb5bbdbe0146ec1d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716971564 +0100	checkout: moving from marcosertoli/ppts_inconsistencies to bda_dev
a247268707bf3e509e41beb1bb5bbdbe0146ec1d 23cad37d7170d986a015d83c511fe8316e720a32 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716976320 +0100	commit: standardising naming convention
23cad37d7170d986a015d83c511fe8316e720a32 a9fd73dfd1ed8522c995ea26c6177ebf8823ec4d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716995744 +0100	commit: removing contexts and integrating ppts before optimisation workflow
a9fd73dfd1ed8522c995ea26c6177ebf8823ec4d 22236844713bad1104b98fdab5897c725f439ad0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716995795 +0100	commit: removing contexts and integrating ppts before optimisation workflow
22236844713bad1104b98fdab5897c725f439ad0 7103400b9c28ad844919ff5458418d56979b5160 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716995839 +0100	commit: adding checks in set_transforms and set_equilibrium
7103400b9c28ad844919ff5458418d56979b5160 8dc592cd7a1258351f46d0197e71b9610579e0ef michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716995899 +0100	commit: default profiles not taken from ProfilerGauss
8dc592cd7a1258351f46d0197e71b9610579e0ef 56adeaf8b75ac116f09398b278bcd866257afe66 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716995922 +0100	commit: set_parameters fixed for cases when parameters is None
56adeaf8b75ac116f09398b278bcd866257afe66 526e1aed29c7c19a57b1427c64bea86086973aaa michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716995952 +0100	commit: build_atomic_data now in initialisation
526e1aed29c7c19a57b1427c64bea86086973aaa 4ba46d0eb718c9238eba8d8374808c1a6d2597db michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716995990 +0100	commit: stripping out of context objects from BayesWorkflow
4ba46d0eb718c9238eba8d8374808c1a6d2597db cebd875a89201687cae6854146f6d571c4fb41bb michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716996034 +0100	commit: reworking to interface with new priors
cebd875a89201687cae6854146f6d571c4fb41bb cf669855a0aaa31a78a8a05a79e8aa2153602a7e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716996056 +0100	commit: standardising naming convention
cf669855a0aaa31a78a8a05a79e8aa2153602a7e 4049157e9c99658c107a4c20be9c640248cfd225 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716996125 +0100	commit: removing carbon
4049157e9c99658c107a4c20be9c640248cfd225 fadbfde32676928d45edcc5b101d59bb54903e3d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716996136 +0100	checkout: moving from bda_dev to bda
fadbfde32676928d45edcc5b101d59bb54903e3d 4049157e9c99658c107a4c20be9c640248cfd225 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716996169 +0100	checkout: moving from bda to bda_dev
4049157e9c99658c107a4c20be9c640248cfd225 306ab63012511f820da586713c3d12dfae0633c0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716996174 +0100	merge bda: Merge made by the 'ort' strategy.
306ab63012511f820da586713c3d12dfae0633c0 35a30196184820c96c22de165bc3cbbf3c2f7c2c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716997235 +0100	commit: ppts profiles interpolating on plasma.rho
35a30196184820c96c22de165bc3cbbf3c2f7c2c 675738e35c792de96762d5931ab4a383b694ff58 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716997242 +0100	checkout: moving from bda_dev to main
675738e35c792de96762d5931ab4a383b694ff58 9f703f07f677e423e447c20be35eb9b949423473 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716997251 +0100	pull origin: Fast-forward
9f703f07f677e423e447c20be35eb9b949423473 fadbfde32676928d45edcc5b101d59bb54903e3d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716997263 +0100	checkout: moving from main to bda
fadbfde32676928d45edcc5b101d59bb54903e3d d319e97bee14057138008b2b88e18733e246d701 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716997267 +0100	merge main: Merge made by the 'ort' strategy.
d319e97bee14057138008b2b88e18733e246d701 35a30196184820c96c22de165bc3cbbf3c2f7c2c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716997293 +0100	checkout: moving from bda to bda_dev
35a30196184820c96c22de165bc3cbbf3c2f7c2c 7625b56b0ba66296496a56beaa52ba0f71070f26 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716997305 +0100	merge bda: Merge made by the 'ort' strategy.
7625b56b0ba66296496a56beaa52ba0f71070f26 55adfd9d2f49905ce0f394318866333fc9163ba0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716998304 +0100	commit: stashing
55adfd9d2f49905ce0f394318866333fc9163ba0 9f703f07f677e423e447c20be35eb9b949423473 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716998317 +0100	checkout: moving from bda_dev to main
9f703f07f677e423e447c20be35eb9b949423473 9f703f07f677e423e447c20be35eb9b949423473 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716998363 +0100	checkout: moving from main to mg/ppts_inconsistencies_bug
9f703f07f677e423e447c20be35eb9b949423473 d4933692bd54f559d9c4ba68c9743fe70200b792 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716998755 +0100	commit: typo in rpos
d4933692bd54f559d9c4ba68c9743fe70200b792 9f703f07f677e423e447c20be35eb9b949423473 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716999066 +0100	checkout: moving from mg/ppts_inconsistencies_bug to main
9f703f07f677e423e447c20be35eb9b949423473 3574d533fb55d00fe6b8d8c285f3d2590092062d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716999071 +0100	pull origin: Fast-forward
3574d533fb55d00fe6b8d8c285f3d2590092062d d319e97bee14057138008b2b88e18733e246d701 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716999079 +0100	checkout: moving from main to bda
d319e97bee14057138008b2b88e18733e246d701 3b70328c5ea7ac054f59027d049aed8f2e326d8a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716999085 +0100	merge main: Merge made by the 'ort' strategy.
3b70328c5ea7ac054f59027d049aed8f2e326d8a 55adfd9d2f49905ce0f394318866333fc9163ba0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716999095 +0100	checkout: moving from bda to bda_dev
55adfd9d2f49905ce0f394318866333fc9163ba0 1707dc39e84cdb35049800973d27a7fc4085a8cd michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1716999098 +0100	merge bda: Merge made by the 'ort' strategy.
1707dc39e84cdb35049800973d27a7fc4085a8cd e04e39f41f60e52e168aabedb7dd8100921fe1a5 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717494155 +0100	commit: removing data_context and plasma_contexts
e04e39f41f60e52e168aabedb7dd8100921fe1a5 7d56a0e865629b6f970071b3e7962007fb6acfeb michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717494186 +0100	commit: debug kwarg added
7d56a0e865629b6f970071b3e7962007fb6acfeb 3f8b167c0b660581f1d87a6cc96e1b9a9b5040e3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717494422 +0100	commit: standardisied transform attribute name
3f8b167c0b660581f1d87a6cc96e1b9a9b5040e3 dbddfec370dc2e6007b963dd7a56a508abee8488 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717494545 +0100	commit: standardisied transform attribute name
dbddfec370dc2e6007b963dd7a56a508abee8488 29565abf1a7209ceabf105e3f5c1072bcb4a4ba9 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717506871 +0100	commit: print statement if no filter added
29565abf1a7209ceabf105e3f5c1072bcb4a4ba9 6abb597efb3b1cb4a4944a3791c0923392b60bc3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717506908 +0100	commit: toroidal rotation no 2D same as ion temperature
6abb597efb3b1cb4a4944a3791c0923392b60bc3 f2fe40b11a45bafdcfb166e9533328e5dd19e1c5 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717506935 +0100	commit: mapping profiles to midplane rework
f2fe40b11a45bafdcfb166e9533328e5dd19e1c5 17007cfd2c88b2a21c8b0e872264e9c31c7fa852 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717506953 +0100	commit: filters added
17007cfd2c88b2a21c8b0e872264e9c31c7fa852 b886acd96063d4aa9358aa4b285287b78dfaf798 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717506996 +0100	commit: error now implicitly expected in opt_data
b886acd96063d4aa9358aa4b285287b78dfaf798 1445a20db3faea3f6c88d48ed4e145e67077da2f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717507023 +0100	commit: kwargs now correctly passed to models
1445a20db3faea3f6c88d48ed4e145e67077da2f 5eeb94054291141c4b07db5a003df879bf32aa13 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717507046 +0100	commit: updated to work with new prior class
5eeb94054291141c4b07db5a003df879bf32aa13 3574d533fb55d00fe6b8d8c285f3d2590092062d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717507088 +0100	checkout: moving from bda_dev to main
3574d533fb55d00fe6b8d8c285f3d2590092062d 3574d533fb55d00fe6b8d8c285f3d2590092062d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717507206 +0100	checkout: moving from main to mg/equilibrium_now_changes_with_rshift
3574d533fb55d00fe6b8d8c285f3d2590092062d 1c5ce71158c1fb3f85a71fd1a44cf1d3720b5d82 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717513590 +0100	commit: psi and other quantities are shifted with rshift
1c5ce71158c1fb3f85a71fd1a44cf1d3720b5d82 7ab4a08aed069c4c0f4ee5f234f6944a80c0c127 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717514001 +0100	commit: removing references to R_shift now not needed
7ab4a08aed069c4c0f4ee5f234f6944a80c0c127 941cbc2962f3a9a1da6f807e57af27b874b8724a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717514050 +0100	commit: removing references to R_shift now not needed
941cbc2962f3a9a1da6f807e57af27b874b8724a 5e4ff2f9ac04f5c393887518705fef43b979be58 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717514186 +0100	commit: rmji / rmjo also updated
5e4ff2f9ac04f5c393887518705fef43b979be58 1d231debbb9b173786fe91bc69717cac90505dbb michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717514292 +0100	commit: removing references to R_shift
1d231debbb9b173786fe91bc69717cac90505dbb a6226dc2c3e8ba2b32cd3eb01cfde39bcedf43f1 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717514625 +0100	commit: mypy typing
a6226dc2c3e8ba2b32cd3eb01cfde39bcedf43f1 3574d533fb55d00fe6b8d8c285f3d2590092062d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717576936 +0100	checkout: moving from mg/equilibrium_now_changes_with_rshift to main
3574d533fb55d00fe6b8d8c285f3d2590092062d a6226dc2c3e8ba2b32cd3eb01cfde39bcedf43f1 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717577069 +0100	checkout: moving from main to mg/equilibrium_now_changes_with_rshift
a6226dc2c3e8ba2b32cd3eb01cfde39bcedf43f1 9af13eef977882888e397d597cfc94c358780c83 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717578391 +0100	commit: removed interpolation of z and r from flux_coords
9af13eef977882888e397d597cfc94c358780c83 d6e87907ef42df51647d2e8c1343003cee075d23 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717578614 +0100	commit: precommit
d6e87907ef42df51647d2e8c1343003cee075d23 5eeb94054291141c4b07db5a003df879bf32aa13 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717579063 +0100	checkout: moving from mg/equilibrium_now_changes_with_rshift to bda_dev
5eeb94054291141c4b07db5a003df879bf32aa13 bd1b66fafba9c96d0da26c621b51f6c2e081ab94 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717579132 +0100	merge mg/equilibrium_now_changes_with_rshift: Merge made by the 'ort' strategy.
bd1b66fafba9c96d0da26c621b51f6c2e081ab94 760fb9fc3868d935d62544715d32096b43577897 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717594464 +0100	commit: updating
760fb9fc3868d935d62544715d32096b43577897 4779e16ad12c36fc0a2bcabe6a65de78fa4de295 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717595587 +0100	commit: mapping profiles to midplane with equilibrium.flux_coords
4779e16ad12c36fc0a2bcabe6a65de78fa4de295 8e0d47210f4b6f31da468b11f170d85a35f8239a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717595716 +0100	commit: ppts profiles interpolating correctly now
8e0d47210f4b6f31da468b11f170d85a35f8239a 3574d533fb55d00fe6b8d8c285f3d2590092062d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717595801 +0100	checkout: moving from bda_dev to main
3574d533fb55d00fe6b8d8c285f3d2590092062d 91476db865a1682eca497bfea111aff91af1e5f7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717595809 +0100	pull origin: Fast-forward
91476db865a1682eca497bfea111aff91af1e5f7 91476db865a1682eca497bfea111aff91af1e5f7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717595877 +0100	checkout: moving from main to mg/reader_xrcs_update
91476db865a1682eca497bfea111aff91af1e5f7 876a9bf7a2de6d8c82d38fad70c9ee936fb76dfa michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717601275 +0100	commit: now assigning error as coordinate intead of attribute
876a9bf7a2de6d8c82d38fad70c9ee936fb76dfa 094189a5dd13775496b837314eb0f20025ac9a29 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717689197 +0100	commit: Updated helike_spectroscopy to get latest MDS+ structure
094189a5dd13775496b837314eb0f20025ac9a29 c0e50fcf4143131c518e320ef58b150dbc2b6692 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717689252 +0100	commit: new XRCS quantities added
c0e50fcf4143131c518e320ef58b150dbc2b6692 fdd56bd20ac6e6e6d0d2d7fb19c6dd598b8636ff michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717689263 +0100	commit: new XRCS quantities added
fdd56bd20ac6e6e6d0d2d7fb19c6dd598b8636ff 31945b92a9bc7e390a2902254a59ff1676b9f628 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717689341 +0100	commit: filter_coords no longer reordering dims / error added as coordinate of data rather than attribute
31945b92a9bc7e390a2902254a59ff1676b9f628 1a109382b63594f20e17cfe234eb2c60cab4d309 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1717689571 +0100	commit: precommit
1a109382b63594f20e17cfe234eb2c60cab4d309 ce6cdc0483c3d0b94b6e82809dd81efc924355c4 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718009065 +0100	commit: changed spectra to intens
ce6cdc0483c3d0b94b6e82809dd81efc924355c4 8e0d47210f4b6f31da468b11f170d85a35f8239a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718009292 +0100	checkout: moving from mg/reader_xrcs_update to bda_dev
8e0d47210f4b6f31da468b11f170d85a35f8239a ce6cdc0483c3d0b94b6e82809dd81efc924355c4 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718009310 +0100	checkout: moving from bda_dev to mg/reader_xrcs_update
ce6cdc0483c3d0b94b6e82809dd81efc924355c4 6f05bd83e9d1fe3d49cadc4b635889a28347800a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718009457 +0100	commit: defaults split into save and load (removes issues with circular imports)
6f05bd83e9d1fe3d49cadc4b635889a28347800a 58e4c11ba4e384023e9a1210cf6aa1911b38dd9f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718013396 +0100	commit: updated with new MDS+ quantities
58e4c11ba4e384023e9a1210cf6aa1911b38dd9f 3fc97d10bb54484c1c9447685206a947aa56ae76 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718013460 +0100	commit: precommit
3fc97d10bb54484c1c9447685206a947aa56ae76 c829e7b8b21c9abbe35f151d47011f5df9f51c8d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718013472 +0100	commit: precommit
c829e7b8b21c9abbe35f151d47011f5df9f51c8d 42b984721b12edb2a7726eaf24f712ef0f7b0493 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718029154 +0100	commit: read_write_default objects -> load_default_objects
42b984721b12edb2a7726eaf24f712ef0f7b0493 3e4922f0c63f794e5e08cc174f4cd8701d7fbdad michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718029411 +0100	commit: read_write_default objects -> load_default_objects
3e4922f0c63f794e5e08cc174f4cd8701d7fbdad 03e3fca51d5d0b678758b690ee9f8b8495cd2bac michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718029800 +0100	commit: xrcs updated quantities
03e3fca51d5d0b678758b690ee9f8b8495cd2bac 8e0d47210f4b6f31da468b11f170d85a35f8239a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718029815 +0100	checkout: moving from mg/reader_xrcs_update to bda_dev
8e0d47210f4b6f31da468b11f170d85a35f8239a 44c186e0cfd919b4631c9cf48159d20ffa67d8dd michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718030036 +0100	commit (merge): merging with main
44c186e0cfd919b4631c9cf48159d20ffa67d8dd 1406ab79fbe1f1f84708c27539bfc26de2e93536 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718030921 +0100	commit: more impurities included in default profiles
1406ab79fbe1f1f84708c27539bfc26de2e93536 ab916a68bdc48387fbbeaef95824672b14e5a3f4 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718030977 +0100	commit: merging with main
ab916a68bdc48387fbbeaef95824672b14e5a3f4 03e3fca51d5d0b678758b690ee9f8b8495cd2bac michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718030993 +0100	checkout: moving from bda_dev to mg/reader_xrcs_update
03e3fca51d5d0b678758b690ee9f8b8495cd2bac ab916a68bdc48387fbbeaef95824672b14e5a3f4 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718031039 +0100	checkout: moving from mg/reader_xrcs_update to bda_dev
ab916a68bdc48387fbbeaef95824672b14e5a3f4 03e3fca51d5d0b678758b690ee9f8b8495cd2bac michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718031050 +0100	checkout: moving from bda_dev to mg/reader_xrcs_update
03e3fca51d5d0b678758b690ee9f8b8495cd2bac bc40909d2cd6a2003aa3d65e97700f20a30f034f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718031323 +0100	commit: fixing import error
bc40909d2cd6a2003aa3d65e97700f20a30f034f ab916a68bdc48387fbbeaef95824672b14e5a3f4 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718031348 +0100	checkout: moving from mg/reader_xrcs_update to bda_dev
ab916a68bdc48387fbbeaef95824672b14e5a3f4 47b6c1dd856f0e202e50ef4a7debe21a167b777a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718031379 +0100	commit: default pulse 11419
47b6c1dd856f0e202e50ef4a7debe21a167b777a bc40909d2cd6a2003aa3d65e97700f20a30f034f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718031417 +0100	checkout: moving from bda_dev to mg/reader_xrcs_update
bc40909d2cd6a2003aa3d65e97700f20a30f034f 0c924ca41f38ae34dc0ebd0e0e3d69a9b2c780a0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718031444 +0100	commit: precommit
0c924ca41f38ae34dc0ebd0e0e3d69a9b2c780a0 47b6c1dd856f0e202e50ef4a7debe21a167b777a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718031454 +0100	checkout: moving from mg/reader_xrcs_update to bda_dev
47b6c1dd856f0e202e50ef4a7debe21a167b777a d3297368caf2676540f8a70f89f3b1c94b86bbb8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718031860 +0100	commit: error handling for when plasma doesn't contain elements in profiles being set
d3297368caf2676540f8a70f89f3b1c94b86bbb8 b6882c7e353fb3eafcd19cdb3b508f6b4119489c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718032147 +0100	commit: more explicit print statement
b6882c7e353fb3eafcd19cdb3b508f6b4119489c c806f98345a7b277947308b6838563e26863525d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718032755 +0100	commit: if error present in data don't assign any
c806f98345a7b277947308b6838563e26863525d 6a0df2157e2aa1c53d2fb930c5ea3d4b75038dd7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718032795 +0100	commit: updating new xrcs quantities
6a0df2157e2aa1c53d2fb930c5ea3d4b75038dd7 0f91d699d7114255a034bf4811f6ce7b53ab98c1 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718115539 +0100	commit: updating to work with opt_data.error
0f91d699d7114255a034bf4811f6ce7b53ab98c1 bb45fcb7ddf4148890dd070ce078b7380465c161 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718115575 +0100	commit: converting counts - > count/s
bb45fcb7ddf4148890dd070ce078b7380465c161 f91762aa91d5ae19568244f9994e4bbc896b9c36 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718115616 +0100	commit: taking model_setting xrcs background from MDS+
f91762aa91d5ae19568244f9994e4bbc896b9c36 ac2c674e819516462e1f5475664553814a9a1b74 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718115643 +0100	commit: plotting added back in
ac2c674e819516462e1f5475664553814a9a1b74 d53d0aa59cff8e86f8553e2a00992dc12b8f1de7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718119436 +0100	commit: trying out new walker mix (0.9 DE + 0.1 Snooker)
d53d0aa59cff8e86f8553e2a00992dc12b8f1de7 3674cf45408850d925679ce932b6aa282a32c5b7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718119466 +0100	commit: more iterations to help convergence
3674cf45408850d925679ce932b6aa282a32c5b7 d7a3a54d516b165e421faae3305248a513dea19d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718119667 +0100	checkout: moving from bda_dev to michaelgemmell/bda_with_pca
d7a3a54d516b165e421faae3305248a513dea19d 3674cf45408850d925679ce932b6aa282a32c5b7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718119717 +0100	checkout: moving from michaelgemmell/bda_with_pca to bda_dev
3674cf45408850d925679ce932b6aa282a32c5b7 3674cf45408850d925679ce932b6aa282a32c5b7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718119744 +0100	checkout: moving from bda_dev to bda_dev_merge_pca
3674cf45408850d925679ce932b6aa282a32c5b7 d7a3a54d516b165e421faae3305248a513dea19d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718119752 +0100	checkout: moving from bda_dev_merge_pca to michaelgemmell/bda_with_pca
d7a3a54d516b165e421faae3305248a513dea19d 3674cf45408850d925679ce932b6aa282a32c5b7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718119782 +0100	checkout: moving from michaelgemmell/bda_with_pca to bda_dev_merge_pca
3674cf45408850d925679ce932b6aa282a32c5b7 1167f70407a770767c11866daa67002cb02f6000 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718120005 +0100	commit: initial commit
1167f70407a770767c11866daa67002cb02f6000 d7a3a54d516b165e421faae3305248a513dea19d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718120014 +0100	checkout: moving from bda_dev_merge_pca to michaelgemmell/bda_with_pca
d7a3a54d516b165e421faae3305248a513dea19d 1167f70407a770767c11866daa67002cb02f6000 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718120060 +0100	checkout: moving from michaelgemmell/bda_with_pca to bda_dev_merge_pca
1167f70407a770767c11866daa67002cb02f6000 22b5528aef62b37e264a1cb642cd7346c9b75c15 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718120314 +0100	commit: basis function for pca profiler added
22b5528aef62b37e264a1cb642cd7346c9b75c15 3674cf45408850d925679ce932b6aa282a32c5b7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718120320 +0100	checkout: moving from bda_dev_merge_pca to bda_dev
3674cf45408850d925679ce932b6aa282a32c5b7 22b5528aef62b37e264a1cb642cd7346c9b75c15 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718177006 +0100	checkout: moving from bda_dev to bda_dev_merge_pca
22b5528aef62b37e264a1cb642cd7346c9b75c15 dcca1494594f31fb601ce60d0c6f91bfbdf1c570 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718178088 +0100	commit: moving methods to functions
dcca1494594f31fb601ce60d0c6f91bfbdf1c570 108a42c81a85914a4b97a7671283749c25eb5d64 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718178149 +0100	commit: making ProfilerBasis inherit from Profiler
108a42c81a85914a4b97a7671283749c25eb5d64 e630069aa5d0579fb309a71c51ce7ab8f93021d1 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718178207 +0100	commit: making ProfilerBasis inherit from Profiler
e630069aa5d0579fb309a71c51ce7ab8f93021d1 d7a3a54d516b165e421faae3305248a513dea19d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718178226 +0100	checkout: moving from bda_dev_merge_pca to michaelgemmell/bda_with_pca
d7a3a54d516b165e421faae3305248a513dea19d e630069aa5d0579fb309a71c51ce7ab8f93021d1 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718178317 +0100	checkout: moving from michaelgemmell/bda_with_pca to bda_dev_merge_pca
e630069aa5d0579fb309a71c51ce7ab8f93021d1 d7a3a54d516b165e421faae3305248a513dea19d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718178348 +0100	checkout: moving from bda_dev_merge_pca to michaelgemmell/bda_with_pca
d7a3a54d516b165e421faae3305248a513dea19d e630069aa5d0579fb309a71c51ce7ab8f93021d1 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718178408 +0100	checkout: moving from michaelgemmell/bda_with_pca to bda_dev_merge_pca
e630069aa5d0579fb309a71c51ce7ab8f93021d1 d1a9d67ede3dab204a849df40972140c3cff3ef8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718179163 +0100	commit: stashing
d1a9d67ede3dab204a849df40972140c3cff3ef8 d30301cdb015cf3b79c52762b11062968d7ad19e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718179203 +0100	commit: priors for basis function added
d30301cdb015cf3b79c52762b11062968d7ad19e d7a3a54d516b165e421faae3305248a513dea19d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718179210 +0100	checkout: moving from bda_dev_merge_pca to michaelgemmell/bda_with_pca
d7a3a54d516b165e421faae3305248a513dea19d d30301cdb015cf3b79c52762b11062968d7ad19e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718179262 +0100	checkout: moving from michaelgemmell/bda_with_pca to bda_dev_merge_pca
d30301cdb015cf3b79c52762b11062968d7ad19e fbfdc8fb14fe3696aa6b3107041424b68243f104 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718183112 +0100	commit: get_prior_names_from_profile_names added
fbfdc8fb14fe3696aa6b3107041424b68243f104 d01d4b93bbc872940ae0532e0722c753c48f2732 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718183142 +0100	commit: type hinting
d01d4b93bbc872940ae0532e0722c753c48f2732 d0fa90d80e0683b2ec32711eb7381a346249af30 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718183168 +0100	commit: variable names
d0fa90d80e0683b2ec32711eb7381a346249af30 4050c5d57ea309fe1ee9a491d8b1a346dcffe33c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718187165 +0100	commit: added profile_names kwarg to initialise_gauss_profilers
4050c5d57ea309fe1ee9a491d8b1a346dcffe33c b2a69b6cf8b59d3d07fdb55a53c4f73d8a055029 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718187728 +0100	commit: limiting edge temperature range
b2a69b6cf8b59d3d07fdb55a53c4f73d8a055029 9159ec5c103ccd088575b259c4526597e16df144 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718196092 +0100	commit: pca now working as intended
9159ec5c103ccd088575b259c4526597e16df144 3a1d8f6bdcf1021a68114253a1313779d1ab24a8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718196117 +0100	commit: tidying up ProfilerBasis
3a1d8f6bdcf1021a68114253a1313779d1ab24a8 9f261cbc3842990bb5b623d2e398ec95e609726b michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718196668 +0100	commit: PCAProcess -> PCAProcessor
9f261cbc3842990bb5b623d2e398ec95e609726b 1f4c1496d45a21bd9de5ba39eb30394e850b5488 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718196696 +0100	commit: update profilers added
1f4c1496d45a21bd9de5ba39eb30394e850b5488 edd4ef0fccff0c03bc90bb268b02f9d8e0860045 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718203993 +0100	commit: set_parameters also sets self.parameters now
edd4ef0fccff0c03bc90bb268b02f9d8e0860045 be0a6458670475ffa21fff139c21ee6542a6d89b michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718269009 +0100	commit: 3d plot for priors added
be0a6458670475ffa21fff139c21ee6542a6d89b 9bcd432b31d9842cad2bb25f91c4aea1ff003318 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718723778 +0100	commit: converting to float128 for precision purposes
9bcd432b31d9842cad2bb25f91c4aea1ff003318 39c9ea8c1c8e054bc2a582958930150ab655fab1 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718723875 +0100	commit: using DIME as emcee move and sampling_from_high_density now uses a uniform distribtion over most likely points
39c9ea8c1c8e054bc2a582958930150ab655fab1 e53fa1e24448b9ae9c9f8c40c3651c925d08efdb michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718727635 +0100	commit: introduced DIME move aimh_prob variable
e53fa1e24448b9ae9c9f8c40c3651c925d08efdb 753da6cb98a2c122e8b5ae7da62e2161118f4297 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718727695 +0100	commit: removed conditional priors between profiles that can't work with current pca methods
753da6cb98a2c122e8b5ae7da62e2161118f4297 5f18628d0e518b08c4f27005949790fe2db1c8fa michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718727737 +0100	commit: pca now working with compoiund priors
5f18628d0e518b08c4f27005949790fe2db1c8fa 524256767d2d65561183610dfec33a5b7524171d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1718728099 +0100	commit: aimh_prob 0.1 -> 0.2
524256767d2d65561183610dfec33a5b7524171d c3c78e14da40a4c20e0c8aa3989f01c335099d04 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719403313 +0100	commit: adjusting priors
c3c78e14da40a4c20e0c8aa3989f01c335099d04 77986c95db38e1cd882311265ba01738e7ef59fe michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719403354 +0100	commit: increasing sampling of KDE
77986c95db38e1cd882311265ba01738e7ef59fe 36b58a3f469af3231485f202600f1c0e0737b0d6 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719403400 +0100	commit: reducing samples of prior for plotting purposes
36b58a3f469af3231485f202600f1c0e0737b0d6 bae457c6a5076fdb12d3936985d71f74e2b3539d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719403484 +0100	commit: fixing default path_name
bae457c6a5076fdb12d3936985d71f74e2b3539d 28da761722bf9bd8d62e23f7086aad9ef6a5fe63 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719403583 +0100	commit: stashin
28da761722bf9bd8d62e23f7086aad9ef6a5fe63 c5ce5e8eba87126c90e2e5f717a1b6dc51721645 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719403792 +0100	commit: Don't add error to opt_data if error is given
c5ce5e8eba87126c90e2e5f717a1b6dc51721645 ca0768dee0bac2ca70d6ce18beb38a12143d2c95 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719405688 +0100	commit: fixed typing
ca0768dee0bac2ca70d6ce18beb38a12143d2c95 b69a2e95d257deb3938810fcc525921403540732 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719414859 +0100	commit: moved to using hydra configs
b69a2e95d257deb3938810fcc525921403540732 f00875659da33f1f545829120bade95e93ba5215 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719415530 +0100	commit: version_base = None
f00875659da33f1f545829120bade95e93ba5215 2a92a8db581ead1b1dd1b6e968eaf6e73b946089 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719478577 +0100	commit: typing
2a92a8db581ead1b1dd1b6e968eaf6e73b946089 3ad27e90576480a5d431defa6b5d037c0576e2ca michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719478635 +0100	commit: rshift->float
3ad27e90576480a5d431defa6b5d037c0576e2ca 3674cf45408850d925679ce932b6aa282a32c5b7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719478719 +0100	checkout: moving from bda_dev_merge_pca to bda_dev
3674cf45408850d925679ce932b6aa282a32c5b7 3ad27e90576480a5d431defa6b5d037c0576e2ca michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719478728 +0100	merge bda_dev_merge_pca: Fast-forward
3ad27e90576480a5d431defa6b5d037c0576e2ca 0c924ca41f38ae34dc0ebd0e0e3d69a9b2c780a0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719822259 +0100	checkout: moving from bda_dev to mg/reader_xrcs_update
0c924ca41f38ae34dc0ebd0e0e3d69a9b2c780a0 dfeb18cc0162b7bacfc3855106d4a38e87723002 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719828905 +0100	commit: helike spectroscopy gets spectra and raw_spectra for uncalibrated signal
dfeb18cc0162b7bacfc3855106d4a38e87723002 74125f3e4ae8325d080a54a1a07b83afaa7e2a3c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719828926 +0100	commit: helike spectroscopy gets spectra and raw_spectra for uncalibrated signal
74125f3e4ae8325d080a54a1a07b83afaa7e2a3c 1fcda62a4bcb15ce5a261714956a93cdb218190a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719828999 +0100	commit: filter names updated
1fcda62a4bcb15ce5a261714956a93cdb218190a ce5ab6edec7e3c623d1c19cdc3af471faff23daa michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719829062 +0100	commit: pre-commit
ce5ab6edec7e3c623d1c19cdc3af471faff23daa 90edea0d6047a8f45ecd74dacd2a890daec94192 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719829353 +0100	commit: helike spectroscopy gets spectra and raw_spectra for uncalibrated signal
90edea0d6047a8f45ecd74dacd2a890daec94192 3ad27e90576480a5d431defa6b5d037c0576e2ca michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1719847504 +0100	checkout: moving from mg/reader_xrcs_update to bda_dev
3ad27e90576480a5d431defa6b5d037c0576e2ca c7008fa27cbf1b6a0f1506b006eb3168897a2cce michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1720082471 +0100	commit: fixed meanz_err typo
c7008fa27cbf1b6a0f1506b006eb3168897a2cce e45d3a070778deb86e88929a65b837fcc7bad2dd michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1720082547 +0100	commit: error now always added to data if in config
e45d3a070778deb86e88929a65b837fcc7bad2dd 50e04e269c42fe0073d2a30b44412414ea01428d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1720082594 +0100	commit: NaNs -> 0 in R conversion created error in calculated std so removed it
50e04e269c42fe0073d2a30b44412414ea01428d 6f627e52404166b8850a9f895d1bf69749336dfe michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1720085071 +0100	commit: config file written to MDS+
6f627e52404166b8850a9f895d1bf69749336dfe c1982e26741ae45b425b0be635f7e724547e8880 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1720085154 +0100	commit: defaulting config to test case
c1982e26741ae45b425b0be635f7e724547e8880 9c1a63682184ab95ada537607cfd378b5bb69bf2 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1720090681 +0100	commit: config str now saved with nice formatting
9c1a63682184ab95ada537607cfd378b5bb69bf2 5eb0843e2d68f9a827b9d4675baeecb3cd293c3f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1720530540 +0100	commit: get_revision now returnscorrect revision rather than always defaulting to best
5eb0843e2d68f9a827b9d4675baeecb3cd293c3f b5d1feb9ad85b6d76773f705bab1186c5328e092 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1720530562 +0100	commit: get_revision now returnscorrect revision rather than always defaulting to best
b5d1feb9ad85b6d76773f705bab1186c5328e092 4fce3d879bc9eaa8dc7e1c8598f55838c1a75896 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1720530606 +0100	commit: __call__ now has kwarg to not read equilibrium 'fetch_equilibrium'
4fce3d879bc9eaa8dc7e1c8598f55838c1a75896 94f2e25f8cfe54adc1639196811515c69993f648 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1720530647 +0100	commit: now treating all diagnostic _likelihoods the same and summing over channels/pixels
94f2e25f8cfe54adc1639196811515c69993f648 fb21c3aef4a734dbfa7b4fbdd9304f1246671e5e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1720530717 +0100	commit: gaussian_kde priors now can be given bandwidth estimator methods
fb21c3aef4a734dbfa7b4fbdd9304f1246671e5e 43394f6072ed8fd5333d6f4738ffaf4284ce636d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1720530758 +0100	commit: now correctly including run_name
43394f6072ed8fd5333d6f4738ffaf4284ce636d 05757127fdc2dcf726f8e34e6d66eb5d9f57ef36 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1720533385 +0100	commit: window masks now takes list instead of slice
05757127fdc2dcf726f8e34e6d66eb5d9f57ef36 4a04d5510bfbfd99e7e199ad3aa20483aa7d3752 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1721053039 +0100	commit: plotting kde priors as contours
4a04d5510bfbfd99e7e199ad3aa20483aa7d3752 64c168f6ca47b475adac8a36ff11c12c4882186d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1721056528 +0100	commit: hydra configs added
64c168f6ca47b475adac8a36ff11c12c4882186d 91476db865a1682eca497bfea111aff91af1e5f7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722327396 +0100	checkout: moving from bda_dev to main
91476db865a1682eca497bfea111aff91af1e5f7 b897dce226a58de5390028a2e18de43ef16d98bc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722327404 +0100	pull origin: Fast-forward
b897dce226a58de5390028a2e18de43ef16d98bc 64c168f6ca47b475adac8a36ff11c12c4882186d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722327457 +0100	checkout: moving from main to bda_dev
64c168f6ca47b475adac8a36ff11c12c4882186d 14a6bc090142e8e005c6bce05c877b2f390b55cd michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722333691 +0100	commit (merge): merging bda_dev with main
14a6bc090142e8e005c6bce05c877b2f390b55cd 470f4667a3d8a5ee615ca37cc05800a95e1fbf9e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722334055 +0100	commit: model names match file names
470f4667a3d8a5ee615ca37cc05800a95e1fbf9e 377170597bfc48f7d40c97e9640d0ff8c54da724 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722334189 +0100	commit: model names match file names
377170597bfc48f7d40c97e9640d0ff8c54da724 2a8c1f2c2ae0ba49b5a4994664fe932e84ad1a28 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722334317 +0100	commit: model names match file names
2a8c1f2c2ae0ba49b5a4994664fe932e84ad1a28 6e3eacf9546b279908ccca3ab33db2eb79bfff3f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722334895 +0100	commit: deleted depreciated test
6e3eacf9546b279908ccca3ab33db2eb79bfff3f 259c3ded20a91d3a1dbe4b31c70c044516c9540d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722334918 +0100	commit: python 3.11 callable import moved
259c3ded20a91d3a1dbe4b31c70c044516c9540d 845c2b8a102b7e89dd7cc801cc6c184ce9ffb6c8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722335117 +0100	commit: model names match file names
845c2b8a102b7e89dd7cc801cc6c184ce9ffb6c8 cfe06460cad4d07b61976c87eb58f7d8926d75c3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722335819 +0100	commit: parameters not required to call plasma_profiler
cfe06460cad4d07b61976c87eb58f7d8926d75c3 6a46e9a39b296c072a8d2f7a8879cb982a3e0691 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722335867 +0100	commit: using profiler_initialiser
6a46e9a39b296c072a8d2f7a8879cb982a3e0691 021a527e7874b2ac700e330287bd4044ab5b9fae michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722342343 +0100	commit: comments removed
021a527e7874b2ac700e330287bd4044ab5b9fae 914493a4de3c5429d9387f0ef90b3e6151bfc29d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722342660 +0100	commit: los_transform -> transform
914493a4de3c5429d9387f0ef90b3e6151bfc29d cc85b77957c43e5bee1824682bb2afcbc72aa682 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722346022 +0100	commit: xarray assign_coords updated
cc85b77957c43e5bee1824682bb2afcbc72aa682 b46f84770815db30ca1a72c2a6f63934489e1613 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722346061 +0100	commit: parameters is empty dict if not given to __call__
b46f84770815db30ca1a72c2a6f63934489e1613 2f48ab3a64cd7c962b8ce26a10833382791ff95e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722350232 +0100	commit: pre-commit
2f48ab3a64cd7c962b8ce26a10833382791ff95e fc6312d19beaccd6cb065e60335f852c41b9076f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722416629 +0100	commit: precommit
fc6312d19beaccd6cb065e60335f852c41b9076f d2ae0ad280e56a18e335b3de31506884d09a0b79 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722429672 +0100	commit: updating bda_run to work for phantom and mock cases
d2ae0ad280e56a18e335b3de31506884d09a0b79 b897dce226a58de5390028a2e18de43ef16d98bc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722429688 +0100	checkout: moving from bda_dev to main
b897dce226a58de5390028a2e18de43ef16d98bc f1e2b3abdeba76c667efce380851490ea7471896 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722429697 +0100	pull origin: Fast-forward
f1e2b3abdeba76c667efce380851490ea7471896 f1e2b3abdeba76c667efce380851490ea7471896 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722429936 +0100	reset: moving to HEAD
f1e2b3abdeba76c667efce380851490ea7471896 d2ae0ad280e56a18e335b3de31506884d09a0b79 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722429938 +0100	checkout: moving from main to bda_dev
d2ae0ad280e56a18e335b3de31506884d09a0b79 f1e2b3abdeba76c667efce380851490ea7471896 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722430004 +0100	checkout: moving from bda_dev to main
f1e2b3abdeba76c667efce380851490ea7471896 d2ae0ad280e56a18e335b3de31506884d09a0b79 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722430041 +0100	checkout: moving from main to bda_dev
d2ae0ad280e56a18e335b3de31506884d09a0b79 3bdc14227dfdc2e36b93591770613fade2fc2107 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722430109 +0100	commit (merge): merging with main
3bdc14227dfdc2e36b93591770613fade2fc2107 56aecf7d98dc53f7d16e89082ff36861c4c19fc6 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722431378 +0100	commit: ignoring conc
56aecf7d98dc53f7d16e89082ff36861c4c19fc6 d1c297f13bd4cf6cd64dee9a791215af3b3b56a8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722431407 +0100	commit: ProfilerBasis works with python3.11
d1c297f13bd4cf6cd64dee9a791215af3b3b56a8 1bc8f62281ec74566d08e8b0289703d81cb3eabc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722431432 +0100	commit: updating
1bc8f62281ec74566d08e8b0289703d81cb3eabc a76b60b7388679d2c6755c0fd419634cbf82ce3b michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722431459 +0100	commit: don't use default plasma
a76b60b7388679d2c6755c0fd419634cbf82ce3b ae8b339a68b1936c4454257ae25f796e74f06b34 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722431483 +0100	commit: speeding up
ae8b339a68b1936c4454257ae25f796e74f06b34 3df9f390ae052c9d94caa96e9da86fc0e5634b55 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722431563 +0100	commit: precommit
3df9f390ae052c9d94caa96e9da86fc0e5634b55 d9772d0a7dfc98e2456240084675f3d98b4796cc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722433747 +0100	commit: dime_sampler and hydra added
d9772d0a7dfc98e2456240084675f3d98b4796cc ed8d8e6778c96abb48bb8d62ea51af4b079c159e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722434041 +0100	commit: initial commit
ed8d8e6778c96abb48bb8d62ea51af4b079c159e 0d0fc0ffd5637fa5e754c964d2408476ce4419b0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722434067 +0100	commit: precommit
0d0fc0ffd5637fa5e754c964d2408476ce4419b0 7d3089c73757ccabd985ce9bcea6fda83e8dad6e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722434215 +0100	commit: don't write mock runs
7d3089c73757ccabd985ce9bcea6fda83e8dad6e 38de302dbe8723714d6e729a8254ab3b7a96cd93 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722434400 +0100	commit: no overrides
38de302dbe8723714d6e729a8254ab3b7a96cd93 4416d26415a3e0651094db64768c88dfa5ee944d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722434433 +0100	commit: no overrides
4416d26415a3e0651094db64768c88dfa5ee944d 37bec62776f53b6b119aaa14df39952ecb00fa58 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722434570 +0100	commit: precommit
37bec62776f53b6b119aaa14df39952ecb00fa58 901e46b70d48bdb507adb62e3e28c00bddc75e6d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722434958 +0100	commit: more walkers for stability
901e46b70d48bdb507adb62e3e28c00bddc75e6d 7b093c3dc5f86e55b3885164819de0f62e2b2e47 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722435342 +0100	commit: use project path rather than relative paths
7b093c3dc5f86e55b3885164819de0f62e2b2e47 387590f94324a158ff9f2ed829e8af021a4e421c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722435369 +0100	commit: precommit
387590f94324a158ff9f2ed829e8af021a4e421c c7cb12ea73ecd43bcf07c1e22de3f85604bdc9eb michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722435967 +0100	commit: precommit
c7cb12ea73ecd43bcf07c1e22de3f85604bdc9eb 2d959f5b13da0499cfb8dcc61e8202f751822b73 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722436956 +0100	commit: using absolute path for tests
2d959f5b13da0499cfb8dcc61e8202f751822b73 936fe260ab16bd4050aa4f1e4a682ee994829799 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722436984 +0100	commit: precommit
936fe260ab16bd4050aa4f1e4a682ee994829799 ea89ba8a43a7a0ad8f8868563ee3891dcb686316 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722438190 +0100	commit: default to mock_run for bda
ea89ba8a43a7a0ad8f8868563ee3891dcb686316 fd6648c4c969025402fc836c8ae1d2c7befbf4da michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722439166 +0100	commit: removing test because config isn't working
fd6648c4c969025402fc836c8ae1d2c7befbf4da df270ec42e9ec6aa6378af5cbb7221c86210eb97 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722440262 +0100	commit: set_equilibrium is broken
df270ec42e9ec6aa6378af5cbb7221c86210eb97 561a6840e5cbb81059f30cf3aa8e98acb3fdb71b michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722440288 +0100	commit: bottleneck added
561a6840e5cbb81059f30cf3aa8e98acb3fdb71b f1e2b3abdeba76c667efce380851490ea7471896 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722440293 +0100	checkout: moving from bda_dev to main
f1e2b3abdeba76c667efce380851490ea7471896 561a6840e5cbb81059f30cf3aa8e98acb3fdb71b michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722441973 +0100	checkout: moving from main to bda_dev
561a6840e5cbb81059f30cf3aa8e98acb3fdb71b f1e2b3abdeba76c667efce380851490ea7471896 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722442627 +0100	checkout: moving from bda_dev to main
f1e2b3abdeba76c667efce380851490ea7471896 561a6840e5cbb81059f30cf3aa8e98acb3fdb71b michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722443040 +0100	checkout: moving from main to bda_dev
561a6840e5cbb81059f30cf3aa8e98acb3fdb71b 1880e9cdb72f3ca79313469d219e05332a17bfae michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722500960 +0100	commit: ppts now doesn't add error to R_shift
1880e9cdb72f3ca79313469d219e05332a17bfae 4a3ad441138ab197d3541e979b33390e9ee29914 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722500983 +0100	commit: xrcs.intens->xrcs.raw_spectra
4a3ad441138ab197d3541e979b33390e9ee29914 0c7545aac818c192b88197348465fb1047acdb26 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722501012 +0100	commit: settings updated
0c7545aac818c192b88197348465fb1047acdb26 5dc0d5cad174d65b9699d251a05533af8040a9b9 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722505698 +0100	commit: fixed testing configs not finding the correct path
5dc0d5cad174d65b9699d251a05533af8040a9b9 f1e2b3abdeba76c667efce380851490ea7471896 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722505714 +0100	checkout: moving from bda_dev to main
f1e2b3abdeba76c667efce380851490ea7471896 f1e2b3abdeba76c667efce380851490ea7471896 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722505731 +0100	checkout: moving from main to mg/upgrade_pytest
f1e2b3abdeba76c667efce380851490ea7471896 faeb25931092b0cfbd2b435277f90b3d3c4f9038 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722505828 +0100	commit: upgrading pytest > 8.3.2
faeb25931092b0cfbd2b435277f90b3d3c4f9038 5dc0d5cad174d65b9699d251a05533af8040a9b9 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722507086 +0100	checkout: moving from mg/upgrade_pytest to bda_dev
5dc0d5cad174d65b9699d251a05533af8040a9b9 c70b7478ee5fc6f3d48491d68089ee1b2109a674 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722507122 +0100	commit: upgrading pytest > 8.3.2
c70b7478ee5fc6f3d48491d68089ee1b2109a674 5efdc14fce98e1c0ac4bc12e9ded55773e004bcf michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722507203 +0100	commit: precommit
5efdc14fce98e1c0ac4bc12e9ded55773e004bcf f1e2b3abdeba76c667efce380851490ea7471896 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722515753 +0100	checkout: moving from bda_dev to main
f1e2b3abdeba76c667efce380851490ea7471896 5efdc14fce98e1c0ac4bc12e9ded55773e004bcf michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722515764 +0100	checkout: moving from main to bda_dev
5efdc14fce98e1c0ac4bc12e9ded55773e004bcf e5d37315b3fde17ce62559936edefd318f7bbb1a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722515800 +0100	commit: inits added
e5d37315b3fde17ce62559936edefd318f7bbb1a f1e2b3abdeba76c667efce380851490ea7471896 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722515968 +0100	checkout: moving from bda_dev to main
f1e2b3abdeba76c667efce380851490ea7471896 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722515981 +0100	pull origin: Fast-forward
58a08830c8ef30ca82c7590aae08235c6aaba007 e5d37315b3fde17ce62559936edefd318f7bbb1a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722515994 +0100	checkout: moving from main to bda_dev
e5d37315b3fde17ce62559936edefd318f7bbb1a 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722516009 +0100	reset: moving to main
58a08830c8ef30ca82c7590aae08235c6aaba007 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722516044 +0100	checkout: moving from bda_dev to mg/rename_models
58a08830c8ef30ca82c7590aae08235c6aaba007 d563f4d19914fecfe0518e5a3b4cae577a3551b0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722516276 +0100	commit: refactored model names to be consistent and self.transform as generic attribute
d563f4d19914fecfe0518e5a3b4cae577a3551b0 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722516431 +0100	checkout: moving from mg/rename_models to bda_dev
58a08830c8ef30ca82c7590aae08235c6aaba007 e5d37315b3fde17ce62559936edefd318f7bbb1a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722516599 +0100	reset: moving to origin/bda_dev
e5d37315b3fde17ce62559936edefd318f7bbb1a 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722516720 +0100	checkout: moving from bda_dev to main
58a08830c8ef30ca82c7590aae08235c6aaba007 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722516749 +0100	checkout: moving from main to mg/refactor_diag_model_names
58a08830c8ef30ca82c7590aae08235c6aaba007 7583d9456ed8d69557d9e143519472495d737d70 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722517330 +0100	commit: refactored model names to be consistent and self.transform as generic attribute
7583d9456ed8d69557d9e143519472495d737d70 849314ce86f5673dea32cd5becc52dc39336a524 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722517784 +0100	commit: commenting this out until bda_dev changes are merged in
849314ce86f5673dea32cd5becc52dc39336a524 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722518528 +0100	checkout: moving from mg/refactor_diag_model_names to main
58a08830c8ef30ca82c7590aae08235c6aaba007 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722518572 +0100	checkout: moving from main to mg/hydra_configs
58a08830c8ef30ca82c7590aae08235c6aaba007 8e60c3d9140df8b4b47ba7c98ed6d43511ce5629 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722518853 +0100	commit: Hydra configs and prior context added
8e60c3d9140df8b4b47ba7c98ed6d43511ce5629 f5031c99de95860e52f8cf7ad8b7275222403334 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722519807 +0100	commit: prior testing added
f5031c99de95860e52f8cf7ad8b7275222403334 337c06e3231ba2bad10e0b4bb320b021c78d1ecf michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722519827 +0100	commit: quick fix of config loading
337c06e3231ba2bad10e0b4bb320b021c78d1ecf 1d1c5a8ef7437ab645b57114f5c5d0f742b144fb michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722519957 +0100	commit: precommit
1d1c5a8ef7437ab645b57114f5c5d0f742b144fb d0070e88b6201b3f70e213ad78d31f3c4f727841 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722520038 +0100	commit: precommit
d0070e88b6201b3f70e213ad78d31f3c4f727841 e8e18c8fd98bac4825c552d94fb4319c71703fd9 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722520305 +0100	commit: hydra added
e8e18c8fd98bac4825c552d94fb4319c71703fd9 7c6f08bf0c06c7104cdc571055308bdb423a4608 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722520718 +0100	commit: hydra added
7c6f08bf0c06c7104cdc571055308bdb423a4608 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722521082 +0100	checkout: moving from mg/hydra_configs to main
58a08830c8ef30ca82c7590aae08235c6aaba007 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722521355 +0100	checkout: moving from main to mg/R_shift_error
58a08830c8ef30ca82c7590aae08235c6aaba007 80f83ba31c6611ef23dc1600fa8bede86a7abfb0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722521445 +0100	commit: R_shift had empty error coord and was causing problems for assigning the equilibrium to plasma
80f83ba31c6611ef23dc1600fa8bede86a7abfb0 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722521558 +0100	checkout: moving from mg/R_shift_error to main
58a08830c8ef30ca82c7590aae08235c6aaba007 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722521631 +0100	checkout: moving from main to mg/include_equilibrium_flag
58a08830c8ef30ca82c7590aae08235c6aaba007 9aaed77c06bdc9938e83857bbbf77c247630bd31 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722521693 +0100	commit: Allow include_equilibrium so not auto failing on pulses with no efit e.g. modelling pulses
9aaed77c06bdc9938e83857bbbf77c247630bd31 849314ce86f5673dea32cd5becc52dc39336a524 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722845621 +0100	checkout: moving from mg/include_equilibrium_flag to mg/refactor_diag_model_names
849314ce86f5673dea32cd5becc52dc39336a524 1f96a1c86ed0f586b66b349a3cc8a243327bc5c2 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722852614 +0100	commit: removed model_init, now models are initialised in the model_coordinator __init__
1f96a1c86ed0f586b66b349a3cc8a243327bc5c2 34199a670d1d76e76935a3b3ed2484d7e8881446 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722852632 +0100	commit: new tests added
34199a670d1d76e76935a3b3ed2484d7e8881446 34e18972793b40f11cc949f31b0e05e39b73011a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722852666 +0100	commit: precommit
34e18972793b40f11cc949f31b0e05e39b73011a 2ece5023a4ee00e9ed68228a236f622f2e89958d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722861439 +0100	commit: simplified call method
2ece5023a4ee00e9ed68228a236f622f2e89958d b221512e193c96c92a3af3c42e3b558eb0c41c46 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722862481 +0100	commit: tests for __call__ added
b221512e193c96c92a3af3c42e3b558eb0c41c46 7c6f08bf0c06c7104cdc571055308bdb423a4608 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722863891 +0100	checkout: moving from mg/refactor_diag_model_names to mg/hydra_configs
7c6f08bf0c06c7104cdc571055308bdb423a4608 faf65ab9fe81cf4e818f0415adc1e9ccd101a1f4 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722866305 +0100	commit: comment typo
faf65ab9fe81cf4e818f0415adc1e9ccd101a1f4 e5d37315b3fde17ce62559936edefd318f7bbb1a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722866398 +0100	checkout: moving from mg/hydra_configs to bda_dev
e5d37315b3fde17ce62559936edefd318f7bbb1a faf65ab9fe81cf4e818f0415adc1e9ccd101a1f4 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722866423 +0100	checkout: moving from bda_dev to mg/hydra_configs
faf65ab9fe81cf4e818f0415adc1e9ccd101a1f4 dddd73c640b91bacd3543ffbe0820e74d63a57fe michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722866439 +0100	commit: precommit
dddd73c640b91bacd3543ffbe0820e74d63a57fe e5d37315b3fde17ce62559936edefd318f7bbb1a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722866458 +0100	checkout: moving from mg/hydra_configs to bda_dev
e5d37315b3fde17ce62559936edefd318f7bbb1a 682fafd39b4b41f0dcdbfffb0bef3562e5234c67 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722866981 +0100	commit (merge): merging with mg/refactor_diag_model_names
682fafd39b4b41f0dcdbfffb0bef3562e5234c67 c8787e9cac8ee9c09878ffb15b9ed151d864b8a0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722867639 +0100	commit: merging with mg/refactor_diag_model_names
c8787e9cac8ee9c09878ffb15b9ed151d864b8a0 c8787e9cac8ee9c09878ffb15b9ed151d864b8a0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722932542 +0100	checkout: moving from bda_dev to mg/pca_and_profilers
c8787e9cac8ee9c09878ffb15b9ed151d864b8a0 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722932558 +0100	checkout: moving from mg/pca_and_profilers to main
58a08830c8ef30ca82c7590aae08235c6aaba007 c8787e9cac8ee9c09878ffb15b9ed151d864b8a0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722932610 +0100	checkout: moving from main to mg/pca_and_profilers
c8787e9cac8ee9c09878ffb15b9ed151d864b8a0 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722932626 +0100	checkout: moving from mg/pca_and_profilers to main
58a08830c8ef30ca82c7590aae08235c6aaba007 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722932645 +0100	checkout: moving from main to mg/pca_and_profilers
58a08830c8ef30ca82c7590aae08235c6aaba007 a49e3858285679e3120485393735f08828a891f8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722932851 +0100	commit: merging with bda_dev
a49e3858285679e3120485393735f08828a891f8 2b5b4a6f2c0289ccc679c6c4787312ef360ad796 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722932961 +0100	commit: typo
2b5b4a6f2c0289ccc679c6c4787312ef360ad796 a9bb9fb1e73ed39f4144351aa4422a44dd15d14f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722933133 +0100	commit: merging with bda_dev
a9bb9fb1e73ed39f4144351aa4422a44dd15d14f f864761986c8703c2cf654e16847d3700a3907ad michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722933410 +0100	commit: moved initialise_gauss_profilers to profilers
f864761986c8703c2cf654e16847d3700a3907ad 538b4a6f733d219de72cce6bbc44e0ece3fe4ebf michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722933445 +0100	commit: removing profiler examples from profiler
538b4a6f733d219de72cce6bbc44e0ece3fe4ebf a62bd438ca425b57cae3d57172188ed7f9df4589 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722940149 +0100	commit: ProfilerGauss now loads defaults from configs
a62bd438ca425b57cae3d57172188ed7f9df4589 33200194585e6f8c349d17dbd12e4b617dcc4826 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722941741 +0100	commit: simplifying __init__
33200194585e6f8c349d17dbd12e4b617dcc4826 cc9131a3533e474d466870c9fb58415b9613cbcc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722941754 +0100	commit: more tests added
cc9131a3533e474d466870c9fb58415b9613cbcc f4ac9f96ae30788b70fb097cb35e3dd3ab6fc080 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722941793 +0100	commit: simplifying __init__
f4ac9f96ae30788b70fb097cb35e3dd3ab6fc080 7f918a85b0818eb12a336eb78eac6160fc5cddee michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1722941835 +0100	commit: initial commit
7f918a85b0818eb12a336eb78eac6160fc5cddee 7da21e8775168cfe402890a1c312156129aeb3ab michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723120822 +0100	commit: removed initialise_gauss_profilers
7da21e8775168cfe402890a1c312156129aeb3ab 8202c3867271fc5bf501c6ceebb5390ee6b3796c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723120985 +0100	commit: pyyaml added for loading configs
8202c3867271fc5bf501c6ceebb5390ee6b3796c da7626a2dc716b1f3215164cdd911864b5966e9a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723638802 +0100	commit: configs added for default profiles
da7626a2dc716b1f3215164cdd911864b5966e9a 09c8c88cb1a885ab1b036a541fd88df9e9e17e60 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723640705 +0100	commit: moving config to outside plasma_profiler
09c8c88cb1a885ab1b036a541fd88df9e9e17e60 772453a55874cbf9370432703a1627118ce2e10e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723717314 +0100	commit: pyYAML doesn't recognise floats unless '+/-' after 'e'
772453a55874cbf9370432703a1627118ce2e10e b245453ee456d8cf7305f210afc095ac9dc8bb97 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723717724 +0100	commit: moved config to global
b245453ee456d8cf7305f210afc095ac9dc8bb97 6ebff16164c50223fc6489a3332d3c8c6a78676b michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723717784 +0100	commit: precommit
6ebff16164c50223fc6489a3332d3c8c6a78676b 9cc4d90892b508fb83dd3f8af9c2cf37db636fe8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723731056 +0100	commit: initial commit
9cc4d90892b508fb83dd3f8af9c2cf37db636fe8 c8e65b0de8677cb5811886653449a147c3c309b3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723731076 +0100	commit: precommit
c8e65b0de8677cb5811886653449a147c3c309b3 dddd73c640b91bacd3543ffbe0820e74d63a57fe michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723734067 +0100	checkout: moving from mg/pca_and_profilers to mg/hydra_configs
dddd73c640b91bacd3543ffbe0820e74d63a57fe 99242488c4aa56c4cccdd7e72deae69a6f73ec16 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723734072 +0100	pull origin: Fast-forward
99242488c4aa56c4cccdd7e72deae69a6f73ec16 3dea772f2a45f65959ee5dac1f7373a2080708cf michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723734142 +0100	commit: precommit
3dea772f2a45f65959ee5dac1f7373a2080708cf ce933a5b5f7916ca331839920ea66366f1a2b061 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723735424 +0100	commit: moved __main__ to examples
ce933a5b5f7916ca331839920ea66366f1a2b061 13251790f3c3bd4de4e52b6a2d1d663c588bf1ad michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723735450 +0100	commit: precommit
13251790f3c3bd4de4e52b6a2d1d663c588bf1ad d7f07f86f0d4dca394ba7e5a653e134bb0efd28f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723735508 +0100	commit: renamed ewample function
d7f07f86f0d4dca394ba7e5a653e134bb0efd28f c8787e9cac8ee9c09878ffb15b9ed151d864b8a0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723735796 +0100	checkout: moving from mg/hydra_configs to bda_dev
c8787e9cac8ee9c09878ffb15b9ed151d864b8a0 0d5a6a39b67b2f26cfa8666a95eaeca761ae6eb3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723735872 +0100	commit: precommit
0d5a6a39b67b2f26cfa8666a95eaeca761ae6eb3 58a08830c8ef30ca82c7590aae08235c6aaba007 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723735996 +0100	checkout: moving from bda_dev to main
58a08830c8ef30ca82c7590aae08235c6aaba007 cffa92f9b33d6b0f5352109573791a6dc71844e7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723736002 +0100	pull origin: Fast-forward
cffa92f9b33d6b0f5352109573791a6dc71844e7 cffa92f9b33d6b0f5352109573791a6dc71844e7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723736287 +0100	checkout: moving from main to main
cffa92f9b33d6b0f5352109573791a6dc71844e7 c8e65b0de8677cb5811886653449a147c3c309b3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723797757 +0100	checkout: moving from main to mg/pca_and_profilers
c8e65b0de8677cb5811886653449a147c3c309b3 edf8ee73a49e37bb2b692299e6038ac4f4338351 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723798635 +0100	commit: removed import of default plasma attributes
edf8ee73a49e37bb2b692299e6038ac4f4338351 cffa92f9b33d6b0f5352109573791a6dc71844e7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723798693 +0100	checkout: moving from mg/pca_and_profilers to main
cffa92f9b33d6b0f5352109573791a6dc71844e7 edf8ee73a49e37bb2b692299e6038ac4f4338351 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723798716 +0100	checkout: moving from main to mg/pca_and_profilers
edf8ee73a49e37bb2b692299e6038ac4f4338351 361e49145a89dc8709a6d5d7883925a30ad8fc3a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723798821 +0100	commit: hydra added
361e49145a89dc8709a6d5d7883925a30ad8fc3a 14c0abe39d18582daefde00d441634a0629a5e7e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723799399 +0100	commit (merge): merging with main
14c0abe39d18582daefde00d441634a0629a5e7e 40a368ed27b718ffeb6b2c80c0e29d4da146d10a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723799436 +0100	commit: precommit
40a368ed27b718ffeb6b2c80c0e29d4da146d10a df7a2a5d2ba3ffbad6a4799a958c6f39ea8117a3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723799610 +0100	commit: merging with main
df7a2a5d2ba3ffbad6a4799a958c6f39ea8117a3 2a05d7424488a71030d137e7bdd594119e080e76 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723814686 +0100	commit: profiles -> profilers
2a05d7424488a71030d137e7bdd594119e080e76 9c408526800c6194d9593419650f991f671a76c8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723815004 +0100	commit: Profiles -> ProfilerGauss
9c408526800c6194d9593419650f991f671a76c8 5cd235c5ccbf461a56ee24041b4fbe068e9a9c25 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1723816147 +0100	commit: Profiles -> ProfilerGauss
5cd235c5ccbf461a56ee24041b4fbe068e9a9c25 75122cf11d56ffdbbbc8b728e1d8a8c06f8798d5 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724158767 +0100	commit: config added
75122cf11d56ffdbbbc8b728e1d8a8c06f8798d5 15bbba2a36809f224ae13c3d5f3ff3a61f182d0f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724158797 +0100	commit: precommit
15bbba2a36809f224ae13c3d5f3ff3a61f182d0f cffa92f9b33d6b0f5352109573791a6dc71844e7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724159776 +0100	checkout: moving from mg/pca_and_profilers to main
cffa92f9b33d6b0f5352109573791a6dc71844e7 cffa92f9b33d6b0f5352109573791a6dc71844e7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724159793 +0100	checkout: moving from main to mg/test_ci_cd
cffa92f9b33d6b0f5352109573791a6dc71844e7 e734c6be8ee294fc10ddc5a01352f011ff69e236 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724159918 +0100	commit: testing ci cd
e734c6be8ee294fc10ddc5a01352f011ff69e236 c7caff78d68cb14d88b480a8b68429b61416b259 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724161754 +0100	commit: update default objects
c7caff78d68cb14d88b480a8b68429b61416b259 0d5a6a39b67b2f26cfa8666a95eaeca761ae6eb3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724163229 +0100	checkout: moving from mg/test_ci_cd to bda_dev
0d5a6a39b67b2f26cfa8666a95eaeca761ae6eb3 c7caff78d68cb14d88b480a8b68429b61416b259 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724228014 +0100	checkout: moving from bda_dev to mg/test_ci_cd
c7caff78d68cb14d88b480a8b68429b61416b259 15bbba2a36809f224ae13c3d5f3ff3a61f182d0f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724232400 +0100	checkout: moving from mg/test_ci_cd to mg/pca_and_profilers
15bbba2a36809f224ae13c3d5f3ff3a61f182d0f 0d5a6a39b67b2f26cfa8666a95eaeca761ae6eb3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724232424 +0100	checkout: moving from mg/pca_and_profilers to bda_dev
0d5a6a39b67b2f26cfa8666a95eaeca761ae6eb3 3357487a2575820e284aa0fb04b5515b15622009 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724233151 +0100	commit (merge): merging with main
3357487a2575820e284aa0fb04b5515b15622009 783017c18a278885039bba04b394d082f709224e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724248949 +0100	commit: using config for default values
783017c18a278885039bba04b394d082f709224e 80bad2335326187bddc8294aae505389929ef39e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724248996 +0100	commit: pyyaml parser fixed
80bad2335326187bddc8294aae505389929ef39e 79836d69af1ea54a7bfa2b03a01006d2eabe806b michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724249014 +0100	commit: reorganising
79836d69af1ea54a7bfa2b03a01006d2eabe806b 63d34314a6f503cf153310f8d329cd22257936b6 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724252960 +0100	commit: reorganising configs
63d34314a6f503cf153310f8d329cd22257936b6 5a50438b38a2e916566b17e86978e7670885faac michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724255133 +0100	commit: reorganising configs
5a50438b38a2e916566b17e86978e7670885faac 9b054d4adce0a1af3a0059bebe83cad226cd361a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724320306 +0100	commit: type change
9b054d4adce0a1af3a0059bebe83cad226cd361a b114db074ee50a3da3f3f479c6792fb58dd39ebf michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724320343 +0100	commit: reorganising configs
b114db074ee50a3da3f3f479c6792fb58dd39ebf bc40a333e451e653e7ac1cb97f6d450b9546f384 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724320379 +0100	commit: reorganising configs
bc40a333e451e653e7ac1cb97f6d450b9546f384 9d02dfb1535e33e76120b814f3ddbdc57adc2616 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724320774 +0100	commit: RUN01 is default
9d02dfb1535e33e76120b814f3ddbdc57adc2616 a5dcecd477a7617e9ce16577a9d382a69c193ba0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724747083 +0100	commit: background can be set as float now
a5dcecd477a7617e9ce16577a9d382a69c193ba0 793e8f245ebd6b3296200cc848498908f4252034 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724747106 +0100	commit: error for xrcs added back in
793e8f245ebd6b3296200cc848498908f4252034 80a573d1b1034b01f2f906a1d38d1b4f0e460b26 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724747146 +0100	commit: typo
80a573d1b1034b01f2f906a1d38d1b4f0e460b26 3b70328c5ea7ac054f59027d049aed8f2e326d8a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724747168 +0100	checkout: moving from bda_dev to bda
3b70328c5ea7ac054f59027d049aed8f2e326d8a 80a573d1b1034b01f2f906a1d38d1b4f0e460b26 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724747181 +0100	merge bda_dev: Fast-forward
80a573d1b1034b01f2f906a1d38d1b4f0e460b26 4c23f18122c61041899d6eb7ab8b8ddf92083e8d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724747603 +0100	commit: precommit
4c23f18122c61041899d6eb7ab8b8ddf92083e8d 4302e1b3629f63e275ae322a7bf8a0f53aa0dd3d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724747706 +0100	commit: initial
4302e1b3629f63e275ae322a7bf8a0f53aa0dd3d a1563e651af0781ba4b15573d6954a53aad67e01 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724747736 +0100	commit: precommit
a1563e651af0781ba4b15573d6954a53aad67e01 15bbba2a36809f224ae13c3d5f3ff3a61f182d0f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724747965 +0100	checkout: moving from bda to mg/pca_and_profilers
15bbba2a36809f224ae13c3d5f3ff3a61f182d0f cffa92f9b33d6b0f5352109573791a6dc71844e7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724748269 +0100	checkout: moving from mg/pca_and_profilers to main
cffa92f9b33d6b0f5352109573791a6dc71844e7 a1563e651af0781ba4b15573d6954a53aad67e01 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724757545 +0100	checkout: moving from main to bda
a1563e651af0781ba4b15573d6954a53aad67e01 a1563e651af0781ba4b15573d6954a53aad67e01 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724757562 +0100	checkout: moving from bda to mg/bda_with_BO
a1563e651af0781ba4b15573d6954a53aad67e01 a1563e651af0781ba4b15573d6954a53aad67e01 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724758106 +0100	checkout: moving from mg/bda_with_BO to bda
a1563e651af0781ba4b15573d6954a53aad67e01 a1563e651af0781ba4b15573d6954a53aad67e01 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1724758130 +0100	checkout: moving from bda to mg/bayes_opt_with_BO
a1563e651af0781ba4b15573d6954a53aad67e01 f260dd2f0a82216be69074015177d6947d659d3f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725444199 +0100	commit: gp evaluations plot added
f260dd2f0a82216be69074015177d6947d659d3f af2bb93548ef9cc5df5dc96205c703442933d920 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725444272 +0100	commit: constrained impurity_density:ar peaking
af2bb93548ef9cc5df5dc96205c703442933d920 d2c2e8459a9f3beb10408d4ba40b0f3f033dddd0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725444330 +0100	commit: tweaking values
d2c2e8459a9f3beb10408d4ba40b0f3f033dddd0 98f5d5a4e1d50a63dcb18fbe390cf3a3de58a2d4 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725446417 +0100	commit: refactoring optimiser context methods
98f5d5a4e1d50a63dcb18fbe390cf3a3de58a2d4 6c21a10b0f4fdce2df24f45a94218fbf6d1f6070 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725451165 +0100	commit: Bayesian Optimisation added as an optimiser_context
6c21a10b0f4fdce2df24f45a94218fbf6d1f6070 ec3adbdedb3dd965b6ea73682715bb93c6aca2c0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725451181 +0100	commit: Bayesian Optimisation added as an optimiser_context
ec3adbdedb3dd965b6ea73682715bb93c6aca2c0 7f276c51d12a95baaab707047b812c76a57646c9 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725451333 +0100	commit: precommit
7f276c51d12a95baaab707047b812c76a57646c9 22d1bd5bd45e20123c7d58c20769e76ff7ecfe08 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725451380 +0100	commit: mock is also phantom
22d1bd5bd45e20123c7d58c20769e76ff7ecfe08 4c3b0d30a9c2bd0fac93cf984d282a6925ed354f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725451438 +0100	commit: method name added
4c3b0d30a9c2bd0fac93cf984d282a6925ed354f 968071576ad264aeacf7d56f7b5a00b1cffa6d3c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725451640 +0100	commit: bo configs added
968071576ad264aeacf7d56f7b5a00b1cffa6d3c 7d80e7f8a3a30eaaf4946f3b821e55bdc5ba08ef michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725451664 +0100	commit: use previous best setting added
7d80e7f8a3a30eaaf4946f3b821e55bdc5ba08ef 5906c4fe4dafe301e1af67bb4f6b7b3886720a97 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725451722 +0100	commit: more sample methods added
5906c4fe4dafe301e1af67bb4f6b7b3886720a97 eebd48f8f8c38c6b8d11197dc31a118f213fde6a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725451778 +0100	commit: norm_y option added
eebd48f8f8c38c6b8d11197dc31a118f213fde6a 3580a2be81d8ffc4e41de66e62c2d33dd97b67ac michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725452284 +0100	commit: removing comments
3580a2be81d8ffc4e41de66e62c2d33dd97b67ac c104d47d80990aa4668a51a251950ff373753818 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725454050 +0100	commit: making test faster
c104d47d80990aa4668a51a251950ff373753818 910fea17dcb85beeba5dfefc01b886e36cc2a9c6 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725454079 +0100	commit: making test faster
910fea17dcb85beeba5dfefc01b886e36cc2a9c6 2eac0646d3eae3d787a45142e9b7fac4042d48b5 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725454100 +0100	commit: emcee moves fixed
2eac0646d3eae3d787a45142e9b7fac4042d48b5 c5e22b33db57f8906b72f7ad1839648b041ab335 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725454135 +0100	commit: model call kwargs moved to right place
c5e22b33db57f8906b72f7ad1839648b041ab335 9e2dc42d8d8d595c58b29f2b50e14600ee437d77 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725456550 +0100	commit: speeding up bda_run tests
9e2dc42d8d8d595c58b29f2b50e14600ee437d77 a953ccc2ed617d136a168033568eb5c8d00e5056 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725456583 +0100	commit: bo test added
a953ccc2ed617d136a168033568eb5c8d00e5056 187cd9a63f179099f2050d914b3b2dc4fa338606 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725456614 +0100	commit: precommit
187cd9a63f179099f2050d914b3b2dc4fa338606 5ab9dd4e292f270ad3b41da362c10f4b1eb8b272 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725456680 +0100	commit: bo test added
5ab9dd4e292f270ad3b41da362c10f4b1eb8b272 aa6d59c33de5d7031ba1f49721205f8ee64844f5 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725456730 +0100	commit: bo template added
aa6d59c33de5d7031ba1f49721205f8ee64844f5 92b8ee91a97a72791d3a9fb92d8961d0c30817ba michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725456762 +0100	commit: mock template added
92b8ee91a97a72791d3a9fb92d8961d0c30817ba 15a0f0d4382f60677d64f56a7019cf9803c378e7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725457258 +0100	commit: precommit
15a0f0d4382f60677d64f56a7019cf9803c378e7 7e1a28775137de1e89fd3328cc83e86e5105e448 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725457427 +0100	commit: precommit
7e1a28775137de1e89fd3328cc83e86e5105e448 328bb97d73cd9048344efc310939d8a7cdc5d367 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725457822 +0100	commit: scikit-optimize added
328bb97d73cd9048344efc310939d8a7cdc5d367 209b95150abdf97bf4f7cb58dac969cb4c130f0c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725462699 +0100	commit: fixing config settings
209b95150abdf97bf4f7cb58dac969cb4c130f0c 425e42e7f81deca1c3d129613f615575a2c054ee michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725530366 +0100	commit: defaulting to 2 pca components
425e42e7f81deca1c3d129613f615575a2c054ee 4bff3b320be157ac476f55e9c992e32c4b6965db michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725530436 +0100	commit: writing to 43000000
4bff3b320be157ac476f55e9c992e32c4b6965db 668abcd6355a3b85b433eba4c2f5d2b68bdc9593 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725530509 +0100	commit: constraining ion_temperature.peaking
668abcd6355a3b85b433eba4c2f5d2b68bdc9593 4d5999569930e4795f9738665a727ec7bf55d185 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725530550 +0100	commit: bo settings <- acq_optimiser=lsbfg
4d5999569930e4795f9738665a727ec7bf55d185 e4f65307deedc05fc3a49adef9fba9e4c1f79139 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725530678 +0100	commit: xrcs.norm_y not used
e4f65307deedc05fc3a49adef9fba9e4c1f79139 fa63f146342650a041e6b0366c509f388062cde2 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725530705 +0100	commit: precommit
fa63f146342650a041e6b0366c509f388062cde2 ea97ddc6f1ec4b6fce6f10f3d083b087d841dc07 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725546661 +0100	commit: useless log removed
ea97ddc6f1ec4b6fce6f10f3d083b087d841dc07 da28cf9ec453e8124724f0b37bcfa6e966ce7e0c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725546695 +0100	commit: ion_temperature.peaking min = 1.5
da28cf9ec453e8124724f0b37bcfa6e966ce7e0c a1563e651af0781ba4b15573d6954a53aad67e01 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725546904 +0100	checkout: moving from mg/bayes_opt_with_BO to bda
a1563e651af0781ba4b15573d6954a53aad67e01 80a573d1b1034b01f2f906a1d38d1b4f0e460b26 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725546937 +0100	checkout: moving from bda to bda_dev
80a573d1b1034b01f2f906a1d38d1b4f0e460b26 a1563e651af0781ba4b15573d6954a53aad67e01 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725546949 +0100	checkout: moving from bda_dev to bda
a1563e651af0781ba4b15573d6954a53aad67e01 cffa92f9b33d6b0f5352109573791a6dc71844e7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725547054 +0100	checkout: moving from bda to main
cffa92f9b33d6b0f5352109573791a6dc71844e7 da28cf9ec453e8124724f0b37bcfa6e966ce7e0c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725548746 +0100	checkout: moving from main to mg/bayes_opt_with_BO
da28cf9ec453e8124724f0b37bcfa6e966ce7e0c 8cf542d57ad36e614721fa9635b273135efb784c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725611405 +0100	commit: filtering pi to only 1 channel
8cf542d57ad36e614721fa9635b273135efb784c cffa92f9b33d6b0f5352109573791a6dc71844e7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725611416 +0100	checkout: moving from mg/bayes_opt_with_BO to main
cffa92f9b33d6b0f5352109573791a6dc71844e7 cffa92f9b33d6b0f5352109573791a6dc71844e7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725611487 +0100	checkout: moving from main to mg/ln_likelihood_precision_fix
cffa92f9b33d6b0f5352109573791a6dc71844e7 cffa92f9b33d6b0f5352109573791a6dc71844e7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725613752 +0100	checkout: moving from mg/ln_likelihood_precision_fix to main
cffa92f9b33d6b0f5352109573791a6dc71844e7 8cf542d57ad36e614721fa9635b273135efb784c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725613773 +0100	checkout: moving from main to mg/bayes_opt_with_BO
8cf542d57ad36e614721fa9635b273135efb784c 9d8dbf8babaacffa824df056962a8c7a1686576f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725956095 +0100	commit: running test with mathmp
9d8dbf8babaacffa824df056962a8c7a1686576f 8ba6ad503a63706cd519743b30d47bd225ae8dc5 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1725956155 +0100	commit: reverting change
8ba6ad503a63706cd519743b30d47bd225ae8dc5 43199ae4672f9c43d815f5f982b1b481497d47c3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726046837 +0100	commit: tuning params
43199ae4672f9c43d815f5f982b1b481497d47c3 6c59310913bf02ccdd86ceecbf524b172577e9e8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726568188 +0100	commit: TWS_B plots added
6c59310913bf02ccdd86ceecbf524b172577e9e8 f78e3be8250e09bdbe5aadf054bddea59760d9d0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726568319 +0100	commit: moved bayes_plot to plotters/plot_bda
f78e3be8250e09bdbe5aadf054bddea59760d9d0 60825258334023694d04932870330bdd7fa38b9c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726568548 +0100	commit: norm_spectra and scale_spectra kwargs added to HelikeSpectrometer call
60825258334023694d04932870330bdd7fa38b9c 7b1d754b36f48553521699280de812254483c41e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726568587 +0100	commit: xrcs window reduced to only w line
7b1d754b36f48553521699280de812254483c41e 5d81be9f34e10b3657104d335a21c2d6537dc175 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726569245 +0100	commit: handling small numbers with mpmath
5d81be9f34e10b3657104d335a21c2d6537dc175 a07dd31cbc5b16aa9dfe25cdf33677d17721d766 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726569299 +0100	commit: moved bayes_plot to plotters/plot_bda
a07dd31cbc5b16aa9dfe25cdf33677d17721d766 99b9deb8bc74aa6e5161e2a9aacee3b071f14395 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726569374 +0100	commit: set_transform checks if transform is available instead of if method exists
99b9deb8bc74aa6e5161e2a9aacee3b071f14395 af5dbc0de96ac766b5cc43d4ef7b8ab8ef5bba39 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726569476 +0100	commit: if none profile name given then ignore it
af5dbc0de96ac766b5cc43d4ef7b8ab8ef5bba39 51fcf46147ae65cda16ceaebe8346050b25b2103 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726569529 +0100	commit: sample_from_best_half added
51fcf46147ae65cda16ceaebe8346050b25b2103 d2e8e0a5e30d04f2c73ae423ef8db467d6d1b3f2 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726569641 +0100	commit: moved to workflows/bda
d2e8e0a5e30d04f2c73ae423ef8db467d6d1b3f2 e1bc0d8e71344315cbd7aa7994530caafc02c6f1 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726569660 +0100	commit: moved to workflows/bda
e1bc0d8e71344315cbd7aa7994530caafc02c6f1 a0ce5d7163950d87c4b2c5ee19c0be0104df637d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726569714 +0100	commit: moved to workflows/bda
a0ce5d7163950d87c4b2c5ee19c0be0104df637d 157e7789465c354279320969f480872f1f3c9ec7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726570410 +0100	commit: profiles -> profiler_gauss
157e7789465c354279320969f480872f1f3c9ec7 bd325b6991897e1fb07685c4be1dc1672c7728a5 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726570477 +0100	commit: separated each profiler to own file
bd325b6991897e1fb07685c4be1dc1672c7728a5 188737ddaf50664c3cfa882ef6e2ee1a53c2bd31 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726577328 +0100	commit: profiler -> profilers
188737ddaf50664c3cfa882ef6e2ee1a53c2bd31 68c838751d1cc4151f0b7544b48e023e135b9de5 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726577370 +0100	commit: profiler -> profilers
68c838751d1cc4151f0b7544b48e023e135b9de5 e01aee626ac5d592d5241658045d9d4c063af970 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726577439 +0100	commit: gaussian moved to profiler_gauss
e01aee626ac5d592d5241658045d9d4c063af970 68095ee1c097597752099d54a77472a26a4ef60a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726577496 +0100	commit: peaking reduced for ion temperature
68095ee1c097597752099d54a77472a26a4ef60a 97428232739d7cf2accf27f560ad348e3b1f2bcc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726579350 +0100	commit: using xrcs.scale_spectra
97428232739d7cf2accf27f560ad348e3b1f2bcc 483ddf6be44081be3e523f4d8c5f7e8c8f1c8472 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726579391 +0100	commit: peaking max lowered
483ddf6be44081be3e523f4d8c5f7e8c8f1c8472 5475b69dbb0232dfd5d2575ae4642e149f04d886 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726579436 +0100	commit: tws -> tws_c
5475b69dbb0232dfd5d2575ae4642e149f04d886 4f23772276f8ccb134e51f8ffe3afe560cc2efd7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726579481 +0100	commit: ion_temperature.peaking lowered
4f23772276f8ccb134e51f8ffe3afe560cc2efd7 e34eaca34d57d134a353792a8ba7ad4f227899db michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726579523 +0100	commit: only use central pi channel
e34eaca34d57d134a353792a8ba7ad4f227899db b3e01d5e843d94e6fd6243aeb1a0a58d07b3e7ac michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726580077 +0100	commit: profiler->profilers
b3e01d5e843d94e6fd6243aeb1a0a58d07b3e7ac 3dedb007bed7b2bb7dfdd2e8ef2c7af89cce1544 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726580111 +0100	commit: profiler->profilers
3dedb007bed7b2bb7dfdd2e8ef2c7af89cce1544 5279020ac206b7e298aea53f72fff2decfdb2773 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726580155 +0100	commit: profiler->profilers
5279020ac206b7e298aea53f72fff2decfdb2773 33a0c6a0ffa6d6dc8729538de77bcfc03b6d9817 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726581347 +0100	commit: reading config based on indica.__file__
33a0c6a0ffa6d6dc8729538de77bcfc03b6d9817 4e125ca4c6ea73ac97e7bf5d930231703785b2b3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726581401 +0100	commit: reading config based on indica.__file__
4e125ca4c6ea73ac97e7bf5d930231703785b2b3 39faf97e8b1c6103a5c7b5f846057acb15cb57e8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726581687 +0100	commit: initialise_gauss_profilers moved to profiler_gauss
39faf97e8b1c6103a5c7b5f846057acb15cb57e8 df67275f6c8e681375d7e7d4cabaf708c490a7d6 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726581719 +0100	commit: initialise_gauss_profilers moved to profiler_gauss
df67275f6c8e681375d7e7d4cabaf708c490a7d6 aadb0ad5fba55eb425e929bfbfe2d6eff9aecb1e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726581801 +0100	commit: profiler->profilers
aadb0ad5fba55eb425e929bfbfe2d6eff9aecb1e e95efb4f0d8698a3cf9587d3b55bb835169bba27 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726585538 +0100	commit: neutral_density.peaking = 1
e95efb4f0d8698a3cf9587d3b55bb835169bba27 2bb90b5ac2929c046a33bd466c9434bd91e57f73 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726585568 +0100	commit: reverting back to main
2bb90b5ac2929c046a33bd466c9434bd91e57f73 d11092763fd4f1f910f1224890ea7960b1e3f674 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726585613 +0100	commit: profiler->profilers
d11092763fd4f1f910f1224890ea7960b1e3f674 2f2bbb053093c4beeb90bf29015ea59fc1b5d092 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726585671 +0100	commit: reverting back to main
2f2bbb053093c4beeb90bf29015ea59fc1b5d092 b2f2eeed346998c9d142c0b39e445e5271c2441f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726585751 +0100	commit: sortby coordinates
b2f2eeed346998c9d142c0b39e445e5271c2441f cf4e78c262def9ebac4df1c2764f7e83627b08b5 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726585771 +0100	commit: tws_b added
cf4e78c262def9ebac4df1c2764f7e83627b08b5 9aa12072d9a3f3dbb80e4b045e0743e288026dfa michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726585816 +0100	commit: profiler->profilers
9aa12072d9a3f3dbb80e4b045e0743e288026dfa e4a7db90d83820f0afd81053c450e35f4674e8f8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726585880 +0100	commit: workflows->workflows.bda
e4a7db90d83820f0afd81053c450e35f4674e8f8 8d4b82e164508c8561f55633e76e854e04da5e2b michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726585939 +0100	commit: precommit
8d4b82e164508c8561f55633e76e854e04da5e2b 1c854f86cb86fb82e83e9068cd43dd776476a465 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726585979 +0100	commit: tws_b added
1c854f86cb86fb82e83e9068cd43dd776476a465 db170d8883051fcf2d95121278c5cb4b7f36d5ca michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726586838 +0100	commit: mpmath for high precision computations
db170d8883051fcf2d95121278c5cb4b7f36d5ca fb82a2a307bbea605ba8a2eeb993dd7b2bdd8707 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726647856 +0100	commit: removing type attribute
fb82a2a307bbea605ba8a2eeb993dd7b2bdd8707 4d5247326ed7265b50a37bed930506e3d7a65878 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726650258 +0100	commit: using example_plasma function
4d5247326ed7265b50a37bed930506e3d7a65878 deb685e1a5d8554109d3b9b83821cbde76e70bd4 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726650710 +0100	commit: PlasmaProfiles -> PlasmaProfiler
deb685e1a5d8554109d3b9b83821cbde76e70bd4 d92ea16d82704348dffe3ee46f36c300cb9c40f3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726653129 +0100	commit: fixed tests
d92ea16d82704348dffe3ee46f36c300cb9c40f3 5faeed0aa8b54d7b648e7a72ac44ba3c87fa7a6c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726653170 +0100	commit: precommit
5faeed0aa8b54d7b648e7a72ac44ba3c87fa7a6c cffa92f9b33d6b0f5352109573791a6dc71844e7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726653186 +0100	checkout: moving from mg/bayes_opt_with_BO to main
cffa92f9b33d6b0f5352109573791a6dc71844e7 5faeed0aa8b54d7b648e7a72ac44ba3c87fa7a6c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726653202 +0100	checkout: moving from main to mg/bayes_opt_with_BO
5faeed0aa8b54d7b648e7a72ac44ba3c87fa7a6c f7900bc68f5bcfe7d2e87c391549e38ad2c37fa1 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726653361 +0100	commit: updating
f7900bc68f5bcfe7d2e87c391549e38ad2c37fa1 a68c458d58928409ddb8c6ab493a6ec4e89a375c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726653451 +0100	commit: removing comment
a68c458d58928409ddb8c6ab493a6ec4e89a375c 91caaadd4ad879d387bcbb8bfed9bd4530a6d98b michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726653586 +0100	commit: removing comments
91caaadd4ad879d387bcbb8bfed9bd4530a6d98b b63b6145565a5a5b6e5104d83f582f3d482cf7e1 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726653911 +0100	commit: plot_bda filepath is relative to indica module
b63b6145565a5a5b6e5104d83f582f3d482cf7e1 fdad09bc8b9ae51a8e58b468107b52099b5836cd michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726655110 +0100	commit: r_shift now includes error
fdad09bc8b9ae51a8e58b468107b52099b5836cd f8cf4cb721ebe76ff1e8fb4db016a3298ebb75ff michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726655259 +0100	commit: precommit
f8cf4cb721ebe76ff1e8fb4db016a3298ebb75ff 9b160856f0bb5686fca934fa6237917fa79d5c7d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1726670113 +0100	commit: vtor profile can now be assigned to match ion_temperature shape
9b160856f0bb5686fca934fa6237917fa79d5c7d 06d808b6433e2c031fef65dde157bb0bae5ff1ec michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1727095707 +0100	commit: mpmath added
06d808b6433e2c031fef65dde157bb0bae5ff1ec cffa92f9b33d6b0f5352109573791a6dc71844e7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1727097725 +0100	checkout: moving from mg/bayes_opt_with_BO to main
cffa92f9b33d6b0f5352109573791a6dc71844e7 316a06a33b87daa493129829f1cc351bc1e9bbf8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1727097743 +0100	pull origin: Fast-forward
316a06a33b87daa493129829f1cc351bc1e9bbf8 0ffcd7846dbeaf02c8dc0bad483757c8510495cc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1727098097 +0100	commit: testing emcee has more samples to assist convergence
0ffcd7846dbeaf02c8dc0bad483757c8510495cc 0ffcd7846dbeaf02c8dc0bad483757c8510495cc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1727098126 +0100	checkout: moving from main to mg/quick_emcee_test_fix
0ffcd7846dbeaf02c8dc0bad483757c8510495cc 0ffcd7846dbeaf02c8dc0bad483757c8510495cc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1727098260 +0100	checkout: moving from mg/quick_emcee_test_fix to main
0ffcd7846dbeaf02c8dc0bad483757c8510495cc 0ffcd7846dbeaf02c8dc0bad483757c8510495cc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1727098452 +0100	checkout: moving from main to main
0ffcd7846dbeaf02c8dc0bad483757c8510495cc d4933692bd54f559d9c4ba68c9743fe70200b792 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1727098534 +0100	checkout: moving from main to mg/ppts_inconsistencies_bug
d4933692bd54f559d9c4ba68c9743fe70200b792 0ffcd7846dbeaf02c8dc0bad483757c8510495cc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1727098540 +0100	checkout: moving from mg/ppts_inconsistencies_bug to main
0ffcd7846dbeaf02c8dc0bad483757c8510495cc d4933692bd54f559d9c4ba68c9743fe70200b792 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1727098601 +0100	checkout: moving from main to mg/ppts_inconsistencies_bug
d4933692bd54f559d9c4ba68c9743fe70200b792 0ffcd7846dbeaf02c8dc0bad483757c8510495cc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1727098618 +0100	checkout: moving from mg/ppts_inconsistencies_bug to main
0ffcd7846dbeaf02c8dc0bad483757c8510495cc 9cd5d26c84bf99c81b4e0450200a01ab2539edcf michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1727098698 +0100	checkout: moving from main to michaelgemmell/bayes_workflow
9cd5d26c84bf99c81b4e0450200a01ab2539edcf 0ffcd7846dbeaf02c8dc0bad483757c8510495cc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1727098709 +0100	checkout: moving from michaelgemmell/bayes_workflow to main
0ffcd7846dbeaf02c8dc0bad483757c8510495cc 0ffcd7846dbeaf02c8dc0bad483757c8510495cc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1729844961 +0100	checkout: moving from main to mg/spline_profiler
0ffcd7846dbeaf02c8dc0bad483757c8510495cc 8e813394a79579897684264f4ee8ac2f55ea59b3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1729845067 +0100	commit: PSI_NORM and R_MID structures added to phantom profiles
8e813394a79579897684264f4ee8ac2f55ea59b3 dddbe0251beff9aa2c0f99faed00588344330eac michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1729845193 +0100	commit: configs modified
dddbe0251beff9aa2c0f99faed00588344330eac f24f50ad4a5b8209c8d1454e23afc5f83048066d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1729845252 +0100	commit: transforms updated to include tws_b
f24f50ad4a5b8209c8d1454e23afc5f83048066d 5f10dc5bcf00af94e1c6339a8697eaa05aeabcf6 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1729845280 +0100	commit: plotting updated
5f10dc5bcf00af94e1c6339a8697eaa05aeabcf6 3a0cee781438105797cacb3cdb4970ba6f0cbda6 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730299930 +0000	commit: stashing
3a0cee781438105797cacb3cdb4970ba6f0cbda6 0ffcd7846dbeaf02c8dc0bad483757c8510495cc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730299938 +0000	checkout: moving from mg/spline_profiler to main
0ffcd7846dbeaf02c8dc0bad483757c8510495cc f784db24b1a16b39e4e89e5caa3bda32c31ceca8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730301545 +0000	pull origin: Fast-forward
f784db24b1a16b39e4e89e5caa3bda32c31ceca8 f5cc1f6fb9111e3ac4c408d4acf805c288593c43 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730305839 +0000	pull origin: Fast-forward
f5cc1f6fb9111e3ac4c408d4acf805c288593c43 f5cc1f6fb9111e3ac4c408d4acf805c288593c43 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730382148 +0000	checkout: moving from main to mg/remove_bda
f5cc1f6fb9111e3ac4c408d4acf805c288593c43 dc1960b7928dd6bb43244d5b29b056a9ad47896d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730382605 +0000	commit: removing all bda specific code
dc1960b7928dd6bb43244d5b29b056a9ad47896d f242f75d03e3b05bbeaae4ed6eb2245c9b38d7aa michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730383256 +0000	commit: fixing import error
f242f75d03e3b05bbeaae4ed6eb2245c9b38d7aa 5a50d57a1675945aa0d86679145d54a3846a39ef michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730383754 +0000	commit: removing bda workflow methods from plasma_profiler
5a50d57a1675945aa0d86679145d54a3846a39ef 5781437def6fb5a31c630b1cce06f40fe56b2bc8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730383887 +0000	commit: pre-commit
5781437def6fb5a31c630b1cce06f40fe56b2bc8 d55bb14854133c98d996fbaee11344d32627c44b michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730975566 +0000	commit: readding deleted libraries
d55bb14854133c98d996fbaee11344d32627c44b b20ae28ba82674f45184c0b85aa47ccbeb20fdea michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730975595 +0000	commit: hydra config for bda workflows
b20ae28ba82674f45184c0b85aa47ccbeb20fdea 129d15ff08fb8921c4dc27f4374a3ba6828ef4e8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730975661 +0000	commit: bda workflows
129d15ff08fb8921c4dc27f4374a3ba6828ef4e8 13a49665ec1cf7517629e2841387e29209086b2a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730975688 +0000	commit: spline profilers added
13a49665ec1cf7517629e2841387e29209086b2a 2a3401ab4829812d4fddba695ee47468435b803e michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730975703 +0000	commit: bda plots added
2a3401ab4829812d4fddba695ee47468435b803e 352876a568c75dc9a153991c21adca87c8d241d5 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730975749 +0000	commit: utility functions for saving profiles added to plasma_profiler
352876a568c75dc9a153991c21adca87c8d241d5 d6200009705d1acc07db5303217dc103db48ee5a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730975779 +0000	commit: bda tests readded
d6200009705d1acc07db5303217dc103db48ee5a 27baeba8049b869ba16b28c87211206f68d50b6a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730976160 +0000	commit: linting
27baeba8049b869ba16b28c87211206f68d50b6a 34e6851a031598bc237f0ca40cdfb55b893da38d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730976462 +0000	commit: readding deleted libraries
34e6851a031598bc237f0ca40cdfb55b893da38d 20b9223832c368ee5c83b5c0ce9156f8c512b8dd michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730977195 +0000	commit: config paths fixed
20b9223832c368ee5c83b5c0ce9156f8c512b8dd 62ae116375cf1019e669c24a33eaddf25ba61bbb michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730979035 +0000	commit: fixing emcee test
62ae116375cf1019e669c24a33eaddf25ba61bbb ea157435b0999d9fa67c75e8657151cef01a8681 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730979214 +0000	commit: test configs simplified
ea157435b0999d9fa67c75e8657151cef01a8681 5ede1947479d69f6c9764cfc6f550539ba8686bc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1730980476 +0000	commit: comment updated
5ede1947479d69f6c9764cfc6f550539ba8686bc ad4d93b9814e2d7700c340146ad090e0fcb0fc80 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1731583822 +0000	commit: pass plot kwargs to plots method
ad4d93b9814e2d7700c340146ad090e0fcb0fc80 6709e0da25fdee5eb5deb01a239b8a7da8357f46 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1731583849 +0000	commit: spline examples added
6709e0da25fdee5eb5deb01a239b8a7da8357f46 8c9073d48834b9264f0191fe0a91cdacc4230aa0 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1731583912 +0000	commit: precommit
8c9073d48834b9264f0191fe0a91cdacc4230aa0 334f15fadc8343e30cbcc9980e4dc4524b6edef2 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1731583952 +0000	commit: plots moved to examples
334f15fadc8343e30cbcc9980e4dc4524b6edef2 0cef45c727203764035b85b4b7abdb684d785a43 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1731584193 +0000	commit: precommit
0cef45c727203764035b85b4b7abdb684d785a43 f5cc1f6fb9111e3ac4c408d4acf805c288593c43 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1731935285 +0000	checkout: moving from mg/remove_bda to main
f5cc1f6fb9111e3ac4c408d4acf805c288593c43 17716361f2e7efd261a777ca66552d9547121cef michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1731935294 +0000	pull origin: Fast-forward
17716361f2e7efd261a777ca66552d9547121cef 3833acd1b0cad67c5d7f449a06f2cb58fc6dbc4c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1732700762 +0000	checkout: moving from main to marcosertoli/reader_restructure
3833acd1b0cad67c5d7f449a06f2cb58fc6dbc4c 4c6d0c65ce40b3f2ee0b867f1425bd37a2d3523a michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1732701254 +0000	commit: deleted notebook
4c6d0c65ce40b3f2ee0b867f1425bd37a2d3523a e1dc05813ab4b85b4e9a93a16e732a9953435742 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733146629 +0000	commit: more calls added
e1dc05813ab4b85b4e9a93a16e732a9953435742 f9d4107492abe85904cb3372b09649c51a8bf72d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733146700 +0000	commit: fixing changes to plasma
f9d4107492abe85904cb3372b09649c51a8bf72d 171efc2db638f829ecefa14ee68da3a5157c3318 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733146733 +0000	commit: plasma_profiler methods fixed
171efc2db638f829ecefa14ee68da3a5157c3318 6a43db288acd3c0bc306b03407ff29d34776a828 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733146767 +0000	commit: removed if statement
6a43db288acd3c0bc306b03407ff29d34776a828 685a2c2a95f7b86f7442120e7ab523b34d0e4fe8 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733146787 +0000	commit: R_midplane added
685a2c2a95f7b86f7442120e7ab523b34d0e4fe8 7498343a6ff5b249d030f5216f3659b5b991084b michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733146904 +0000	commit: sortby now doesn't sort time
7498343a6ff5b249d030f5216f3659b5b991084b 6ebba32f51930e8c3a7b952bcdeaa12d3f3e24f4 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733146956 +0000	commit: rho_poloidal->rhop
6ebba32f51930e8c3a7b952bcdeaa12d3f3e24f4 71c55c6e097ceef8291392b28ccbb96393428fa6 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733147012 +0000	commit: always set_transform if it is given
71c55c6e097ceef8291392b28ccbb96393428fa6 09005a41703be7f6bedecdad64ce6f540a2f8777 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733147429 +0000	commit: now if set_equilibrium is called without transforms it fails
09005a41703be7f6bedecdad64ce6f540a2f8777 35f3095a5ba89a2445cc45525750cd1c50e42457 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733147442 +0000	commit: updating
35f3095a5ba89a2445cc45525750cd1c50e42457 e6d89d022aa2c82409b1ddb0e411f68d5a67a67f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733147467 +0000	commit: precommit
e6d89d022aa2c82409b1ddb0e411f68d5a67a67f 4a2294af7fbf1dab0b5f8553791bd7d2451ecf57 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733147529 +0000	pull origin: Merge made by the 'ort' strategy.
4a2294af7fbf1dab0b5f8553791bd7d2451ecf57 4a2294af7fbf1dab0b5f8553791bd7d2451ecf57 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733394348 +0000	checkout: moving from marcosertoli/reader_restructure to mg/reader_post_processing
4a2294af7fbf1dab0b5f8553791bd7d2451ecf57 f59955ac02b149ffa54ad863e6e1234d628f90cb michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733837779 +0000	commit: st40reader now does reading
f59955ac02b149ffa54ad863e6e1234d628f90cb f8b5e80dcf97df0a4509547fd8ac3a0619ae0ca4 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733837796 +0000	commit: st40reader now does reading
f8b5e80dcf97df0a4509547fd8ac3a0619ae0ca4 acce9d8a0f5c17f0328517dd572ab4c1f4ef535c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733837823 +0000	commit: precommit
acce9d8a0f5c17f0328517dd572ab4c1f4ef535c a280a240c50188f5e2302cf8622009e9b73329fc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733838145 +0000	commit: ReadST40 -> ReaderProcessor
a280a240c50188f5e2302cf8622009e9b73329fc 17716361f2e7efd261a777ca66552d9547121cef michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733838315 +0000	checkout: moving from mg/reader_post_processing to main
17716361f2e7efd261a777ca66552d9547121cef 0cdb6bd4a8f9698127a85c6781a60eea4ed34235 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733838326 +0000	pull origin: Fast-forward
0cdb6bd4a8f9698127a85c6781a60eea4ed34235 a280a240c50188f5e2302cf8622009e9b73329fc michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733838337 +0000	checkout: moving from main to mg/reader_post_processing
a280a240c50188f5e2302cf8622009e9b73329fc 4e05f9a8a2f17e7b3492f37b880165318a941620 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733842566 +0000	commit (merge): merging with main
4e05f9a8a2f17e7b3492f37b880165318a941620 b71cac810c5d3af524e0eb37631bd6c70d4fc65d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733842885 +0000	commit: merging with main
b71cac810c5d3af524e0eb37631bd6c70d4fc65d 7890ce438da487089b12336b9081009a96241150 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733842903 +0000	commit: merging with main
7890ce438da487089b12336b9081009a96241150 5e2f741896d29a55b3bcab2461bdb689e9fc5072 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733842921 +0000	commit: merging with main
5e2f741896d29a55b3bcab2461bdb689e9fc5072 8362725b04476aeaf2adaadb05d5ad4d66378785 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733842977 +0000	commit: merging with main
8362725b04476aeaf2adaadb05d5ad4d66378785 72907a9e913849482d396e347ca7a5d8694df0f7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733843220 +0000	commit: merging with main
72907a9e913849482d396e347ca7a5d8694df0f7 e58827980b76d1beec925122e17904d3c28b3d2f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733843265 +0000	commit: precommit
e58827980b76d1beec925122e17904d3c28b3d2f 7073b11dcb06bb34fedee2538411b4f748bd9ed3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733843513 +0000	commit: merging with main
7073b11dcb06bb34fedee2538411b4f748bd9ed3 708a7a3b96a39f6fd4d6e34b9b1ca201885a8ba3 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733843540 +0000	commit: modelreader was causing circular imports
708a7a3b96a39f6fd4d6e34b9b1ca201885a8ba3 0408d0ac6c0330f57189e9ea770e630e64a4b658 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733843875 +0000	commit: precommit
0408d0ac6c0330f57189e9ea770e630e64a4b658 0cdb6bd4a8f9698127a85c6781a60eea4ed34235 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733844750 +0000	checkout: moving from mg/reader_post_processing to main
0cdb6bd4a8f9698127a85c6781a60eea4ed34235 0cdb6bd4a8f9698127a85c6781a60eea4ed34235 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733844771 +0000	checkout: moving from main to mg/model_reader
0cdb6bd4a8f9698127a85c6781a60eea4ed34235 0408d0ac6c0330f57189e9ea770e630e64a4b658 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733848149 +0000	checkout: moving from mg/model_reader to mg/reader_post_processing
0408d0ac6c0330f57189e9ea770e630e64a4b658 795429b980ea059a776c14a7b3d606fe5972abae michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733848563 +0000	commit: modelreader takes in generic dict of models and can filter based on config values
795429b980ea059a776c14a7b3d606fe5972abae 248dbbc2dcdb11cd3edfa1a156da427c283f96eb michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733848588 +0000	commit: precommit
248dbbc2dcdb11cd3edfa1a156da427c283f96eb 0484c761a7cd8d22aab07f5421ec8968a68d7a54 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733850984 +0000	commit: now using modelreader instead of modelcoordinator
0484c761a7cd8d22aab07f5421ec8968a68d7a54 01f8be985f0478fc2f4c547c688e85c6840bd155 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733851057 +0000	commit: modelreader now filters from config settings
01f8be985f0478fc2f4c547c688e85c6840bd155 0824dd3944e532119de6021aaa737b13ae23766f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733851208 +0000	commit: deleted modelcoordinator
0824dd3944e532119de6021aaa737b13ae23766f d544fc255a469485894f8a23879a5b85ec2a767c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733851817 +0000	commit: modelcoordinator -> modelreader
d544fc255a469485894f8a23879a5b85ec2a767c a7dbd97923ae2bcad17f8f0719d4d72c94152610 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733852135 +0000	commit: fixing test
a7dbd97923ae2bcad17f8f0719d4d72c94152610 38223fe8124f2815829921b5f6777bf490a93f6f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733994989 +0000	commit: deleting load_modelling_plasma
38223fe8124f2815829921b5f6777bf490a93f6f 825d48e57428835abf7cf853f48ebd5cdb9c5775 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1733995492 +0000	commit: separated reader filters to own config
825d48e57428835abf7cf853f48ebd5cdb9c5775 890b6e32c6e5629140b1280a5713eb1b33785f1c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1734008889 +0000	commit: removing dt from reader
890b6e32c6e5629140b1280a5713eb1b33785f1c a718e9831e02567c1e8e67af2146f2830129ec52 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1734008993 +0000	commit: pathing fixed
a718e9831e02567c1e8e67af2146f2830129ec52 08e5d874f59868817721c15060139634e6484615 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1734018883 +0000	commit: modelreader no longer does filtering/binning
08e5d874f59868817721c15060139634e6484615 fcc521f6a81b71f1321e5acb865a4754c90f5891 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1734018919 +0000	commit: precommit
fcc521f6a81b71f1321e5acb865a4754c90f5891 631fb35c553a54db683556dc1c0f684f8951a2bd michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1734019147 +0000	commit: import paths
631fb35c553a54db683556dc1c0f684f8951a2bd 40ecc538cb67662cced2e84eea494c30c5e8840d michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1734019241 +0000	commit: paths fixing
40ecc538cb67662cced2e84eea494c30c5e8840d 6ae4e708835a535c0aa2120e453743cab4599452 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1734019289 +0000	commit: paths fixing
6ae4e708835a535c0aa2120e453743cab4599452 7a03f772b36c71a2d16f464f12e4cfdc3cb1022c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1734019542 +0000	commit: paths fixing
7a03f772b36c71a2d16f464f12e4cfdc3cb1022c 0cdb6bd4a8f9698127a85c6781a60eea4ed34235 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1736847993 +0000	checkout: moving from mg/reader_post_processing to main
0cdb6bd4a8f9698127a85c6781a60eea4ed34235 e2473f70df716a19500e3e978cfa064f77cc1ab7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1736848007 +0000	pull origin: Fast-forward
e2473f70df716a19500e3e978cfa064f77cc1ab7 7a03f772b36c71a2d16f464f12e4cfdc3cb1022c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1736848022 +0000	checkout: moving from main to mg/reader_post_processing
7a03f772b36c71a2d16f464f12e4cfdc3cb1022c 7a03f772b36c71a2d16f464f12e4cfdc3cb1022c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1736848112 +0000	reset: moving to HEAD
7a03f772b36c71a2d16f464f12e4cfdc3cb1022c 7a03f772b36c71a2d16f464f12e4cfdc3cb1022c michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1736848156 +0000	checkout: moving from mg/reader_post_processing to mg/reader_post_processing
7a03f772b36c71a2d16f464f12e4cfdc3cb1022c e2473f70df716a19500e3e978cfa064f77cc1ab7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1736848175 +0000	checkout: moving from mg/reader_post_processing to main
e2473f70df716a19500e3e978cfa064f77cc1ab7 e2473f70df716a19500e3e978cfa064f77cc1ab7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1737477027 +0000	checkout: moving from main to mg/plasma_caching_returning_zeros
e2473f70df716a19500e3e978cfa064f77cc1ab7 734b0b34a521b3326b8f40bb30ede4a26b0449ce michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1737632197 +0000	commit: cached properties only have dependencies of types xr.DataArray / added pressure and stored energy to cached properties
734b0b34a521b3326b8f40bb30ede4a26b0449ce e2b75e8aeb938e6901e2ed04d1f1e237d7dd0975 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1737632238 +0000	commit: calling plasma_profiler so profiles are non zero
e2b75e8aeb938e6901e2ed04d1f1e237d7dd0975 51a609e1493e962529c0d5842b6744351cc3781f michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1737632255 +0000	commit: tests added for plasma caching
51a609e1493e962529c0d5842b6744351cc3781f 5a6fc8422e09c19dc9fad622cc6b451f44126578 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1737632685 +0000	commit: pre-commit
5a6fc8422e09c19dc9fad622cc6b451f44126578 8797fff5dee92ad5cb72e3486eee2a8ba3095ddd michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1737633068 +0000	commit: updated plasma caching
8797fff5dee92ad5cb72e3486eee2a8ba3095ddd e2473f70df716a19500e3e978cfa064f77cc1ab7 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1737640449 +0000	checkout: moving from mg/plasma_caching_returning_zeros to main
e2473f70df716a19500e3e978cfa064f77cc1ab7 bf78e9cb6d11aef354d1e0d717993be0c7bd1c22 michael gemmell <michael.gemmell@tokamakenergy.co.uk> 1737640458 +0000	pull origin: Fast-forward
