Metadata-Version: 2.0
Name: pyham
Version: 0.1.0
Summary: A tool to analyse Hierarchical Orthologous Groups (HOGs)
Home-page: http://lab.dessimoz.org/ham
Author: Dessimoz Lab - Laboratory of Computational Evolutionary Biology and Genomics
Author-email: adrian.altenhoff@inf.ethz.ch
License: MIT
Description-Content-Type: UNKNOWN
Keywords: orthology, HOGs, orthoxml
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Requires-Dist: ete3
Requires-Dist: six
Requires-Dist: scipy
Requires-Dist: future
Provides-Extra: dev
Requires-Dist: noise; extra == 'dev'
Requires-Dist: sphinx; extra == 'dev'
Requires-Dist: wheel; extra == 'dev'
Requires-Dist: twine; extra == 'dev'
Requires-Dist: fabric; extra == 'dev'
Requires-Dist: fabric3; extra == 'dev'
Provides-Extra: test
Requires-Dist: noise; extra == 'test'

Ham: A Tool to Analyze Hierarchical Orthologous Groups (HOGs)
=============================================================


Motivation 
----------
Ham is a library to facilitate the analysis of hierarchical orthologous groups.
It also contains a few tools to run standard type of analysis.

Currently, Ham is limited to analyze HOGs that are stored in an orthoXML file.
More information on the schema of orthoxml and some examples are
available at `http://orthoxml.org`_.

For extended documentation we refer to the docs folder that contain information
on common use cases and API documentation of the library.


Installation
------------
Ham is written in python3, with little external dependencies, i.e.
currently ete3, scipy, six. The setup script should resolve these
dependencies automatically. 
Consider using pip to install the package directly from a checked out git repo

.. code-block:: sh

   python -m pip install --upgrade pip
   pip install pyham



