.clang-format
.gitignore
.gitmodules
.travis.yml
CHANGLOG.md
CMakeLists.txt
CONTRIBUTING.md
COPYING
COPYING.LESSER
MANIFEST.in
README.md
setup.py
.github/workflows/clang_format_check.yaml
.github/workflows/publish-sdist-wheels.yml
.github/workflows/run-tests.yml
3rdparty/CMakeLists.txt
CMake/CompilerFlags.cmake
CMake/MorphIOConfig.cmake
MorphIO.egg-info/PKG-INFO
MorphIO.egg-info/SOURCES.txt
MorphIO.egg-info/dependency_links.txt
MorphIO.egg-info/not-zip-safe
MorphIO.egg-info/requires.txt
MorphIO.egg-info/top_level.txt
binds/python/CMakeLists.txt
binds/python/bind_enums.h
binds/python/bind_immutable.cpp
binds/python/bind_immutable.h
binds/python/bind_misc.cpp
binds/python/bind_misc.h
binds/python/bind_mutable.cpp
binds/python/bind_mutable.h
binds/python/bind_vasculature.cpp
binds/python/bind_vasculature.h
binds/python/bindings_utils.cpp
binds/python/bindings_utils.h
binds/python/morphio.cpp
ci/check_clang_format.sh
ci/cpp_test.sh
ci/python_test.sh
doc/BBPLOGO350.jpg
doc/specification.md
doc/specification_neurolucida.md
examples/getting_started.ipynb
examples/getting_started_mutable.ipynb
include/morphio/endoplasmic_reticulum.h
include/morphio/enums.h
include/morphio/errorMessages.h
include/morphio/exceptions.h
include/morphio/glial_cell.h
include/morphio/mito_section.h
include/morphio/mitochondria.h
include/morphio/morphology.h
include/morphio/properties.h
include/morphio/section.h
include/morphio/section_base.h
include/morphio/section_base.tpp
include/morphio/section_iterators.hpp
include/morphio/shared_utils.tpp
include/morphio/soma.h
include/morphio/tools.h
include/morphio/types.h
include/morphio/vector_types.h
include/morphio/version.h
include/morphio/mut/endoplasmic_reticulum.h
include/morphio/mut/glial_cell.h
include/morphio/mut/mito_section.h
include/morphio/mut/mitochondria.h
include/morphio/mut/modifiers.h
include/morphio/mut/morphology.h
include/morphio/mut/section.h
include/morphio/mut/soma.h
include/morphio/mut/writers.h
include/morphio/vasc/iterators.hpp
include/morphio/vasc/properties.h
include/morphio/vasc/section.h
include/morphio/vasc/vasculature.h
morphio/__init__.py
morphio/mut/__init__.py
morphio/vasculature/__init__.py
scripts/check-clang-format-all
src/CMakeLists.txt
src/endoplasmic_reticulum.cpp
src/enums.cpp
src/errorMessages.cpp
src/glial_cell.cpp
src/mito_section.cpp
src/mitochondria.cpp
src/morphology.cpp
src/properties.cpp
src/section.cpp
src/soma.cpp
src/vector_utils.cpp
src/version.cpp.in
src/mut/endoplasmic_reticulum.cpp
src/mut/glial_cell.cpp
src/mut/mito_section.cpp
src/mut/mitochondria.cpp
src/mut/modifiers.cpp
src/mut/morphology.cpp
src/mut/section.cpp
src/mut/soma.cpp
src/mut/writers.cpp
src/readers/lex.cpp
src/readers/morphologyASC.cpp
src/readers/morphologyASC.h
src/readers/morphologyHDF5.cpp
src/readers/morphologyHDF5.h
src/readers/morphologySWC.cpp
src/readers/morphologySWC.h
src/readers/utilsHDF5.h
src/readers/vasculatureHDF5.cpp
src/readers/vasculatureHDF5.h
src/vasc/properties.cpp
src/vasc/section.cpp
src/vasc/vasculature.cpp
tests/CMakeLists.txt
tests/__init__.py
tests/main.cpp
tests/requirement_tests.txt
tests/test_0_API.py
tests/test_10_vasculature.py
tests/test_1_swc.py
tests/test_2_neurolucida.py
tests/test_3_h5.py
tests/test_4_immut.py
tests/test_5_mut.py
tests/test_6_writers.py
tests/test_7_modifiers.py
tests/test_8_all_morphologies.py
tests/test_9_surfaces.py
tests/test_morphology.cpp
tests/utils.py
tests/contrib/catch.hpp
tests/data/astrocyte.h5
tests/data/circle_contour.asc
tests/data/complexe.swc
tests/data/disconnected_neurite.swc
tests/data/iterators.asc
tests/data/mono-type.asc
tests/data/multiple_point_section.asc
tests/data/multiple_soma.swc
tests/data/nested_single_children.asc
tests/data/neurite_wrong_root_point.swc
tests/data/nrn-order-already-sorted.h5
tests/data/nrn_ordering.swc
tests/data/reversed_NRN_neurite_order.swc
tests/data/simple.asc
tests/data/simple.swc
tests/data/simple2.asc
tests/data/soma_cylinders.swc
tests/data/soma_multiple_frustums.swc
tests/data/soma_single_frustum.swc
tests/data/soma_three_points_cylinder.swc
tests/data/spine.asc
tests/data/three_point_soma.swc
tests/data/h5/merged.h5
tests/data/h5/vasculature-broken-section-type.h5
tests/data/h5/vasculature1.h5
tests/data/h5/vasculature2.h5
tests/data/h5/v1/Neuron.h5
tests/data/h5/v1/endoplasmic-reticulum.h5
tests/data/h5/v1/mitochondria.h5
tests/data/h5/v1/monodim.h5
tests/data/h5/v1/simple-broken-section-type.h5
tests/data/h5/v1/simple-negative-section-type.h5
tests/data/h5/v1/simple.h5
tests/data/h5/v1/soma_no_neurites.h5
tests/data/h5/v1/two_child_unmerged.h5
tests/data/h5/v2/Neuron.h5
tests/data/h5/v2/no-metadata.h5