LICENSE
README.rst
setup.cfg
setup.py
bin/cm2export
bin/cm2plot
bin/cm2view
bin/cmonkey2
cmonkey/BSCM.py
cmonkey/__init__.py
cmonkey/cmonkey_run.py
cmonkey/config.py
cmonkey/database.py
cmonkey/datamatrix.py
cmonkey/debug.py
cmonkey/membership.py
cmonkey/meme_suite.py
cmonkey/microarray.py
cmonkey/microbes_online.py
cmonkey/motif.py
cmonkey/network.py
cmonkey/organism.py
cmonkey/patches.py
cmonkey/pssm.py
cmonkey/rsat.py
cmonkey/schedule.py
cmonkey/scoring.py
cmonkey/seqtools.py
cmonkey/set_enrichment.py
cmonkey/stringdb.py
cmonkey/thesaurus.py
cmonkey/util.py
cmonkey/weeder.py
cmonkey/weederlauncher.py
cmonkey/cmviewer/__init__.py
cmonkey/cmviewer/webapp.py
cmonkey/cmviewer/static/images/back_disabled.png
cmonkey/cmviewer/static/images/back_enabled.png
cmonkey/cmviewer/static/images/back_enabled_hover.png
cmonkey/cmviewer/static/images/cmonkey2_logo.png
cmonkey/cmviewer/static/images/favicon.ico
cmonkey/cmviewer/static/images/favicon.png
cmonkey/cmviewer/static/images/forward_disabled.png
cmonkey/cmviewer/static/images/forward_enabled.png
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cmonkey/cmviewer/static/javascripts/arbor.js
cmonkey/cmviewer/static/javascripts/cmviewer_util.js
cmonkey/cmviewer/static/javascripts/cola.adaptor.js
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cmonkey/cmviewer/static/javascripts/highcharts.js
cmonkey/cmviewer/static/javascripts/jquery-2.1.1.min.js
cmonkey/cmviewer/static/javascripts/jquery.dataTables.min.js
cmonkey/cmviewer/static/javascripts/raphael-min.js
cmonkey/cmviewer/static/javascripts/seqlogo.js
cmonkey/cmviewer/static/javascripts/springy.js
cmonkey/cmviewer/static/javascripts/jquery-ui-1.11.2.custom/index.html
cmonkey/cmviewer/static/javascripts/jquery-ui-1.11.2.custom/jquery-ui.css
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cmonkey/cmviewer/static/javascripts/modules/canvas-tools.js
cmonkey/cmviewer/static/javascripts/modules/canvas-tools.src.js
cmonkey/cmviewer/static/javascripts/modules/data.js
cmonkey/cmviewer/static/javascripts/modules/data.src.js
cmonkey/cmviewer/static/javascripts/modules/drilldown.js
cmonkey/cmviewer/static/javascripts/modules/drilldown.src.js
cmonkey/cmviewer/static/javascripts/modules/exporting.js
cmonkey/cmviewer/static/javascripts/modules/exporting.src.js
cmonkey/cmviewer/static/javascripts/modules/funnel.js
cmonkey/cmviewer/static/javascripts/modules/funnel.src.js
cmonkey/cmviewer/static/javascripts/modules/heatmap.js
cmonkey/cmviewer/static/javascripts/modules/heatmap.src.js
cmonkey/cmviewer/static/javascripts/modules/no-data-to-display.js
cmonkey/cmviewer/static/javascripts/modules/no-data-to-display.src.js
cmonkey/cmviewer/static/javascripts/modules/solid-gauge.js
cmonkey/cmviewer/static/javascripts/modules/solid-gauge.src.js
cmonkey/cmviewer/static/stylesheets/jquery.dataTables.css
cmonkey/cmviewer/static/stylesheets/main.css
cmonkey/cmviewer/templates/cluster.html
cmonkey/cmviewer/templates/index.html
cmonkey/cmviewer/templates/not_available.html
cmonkey/default_config/KEGG_taxonomy
cmonkey/default_config/default.ini
cmonkey/default_config/default_pipeline.json
cmonkey/default_config/fasta_test.fa
cmonkey/default_config/proteome2taxid
cmonkey/default_config/rows_and_motifs_pipeline.json
cmonkey/default_config/rows_and_networks_pipeline.json
cmonkey/default_config/rows_pipeline.json
cmonkey/default_config/weeder_pipeline.json
cmonkey/meme/__init__.py
cmonkey/meme/mast.py
cmonkey/meme/meme.py
cmonkey/meme/util.py
cmonkey/tools/__init__.py
cmonkey/tools/export.py
cmonkey/tools/plot_expressions.py
cmonkey/tools/plot_motif_positions.py
cmonkey/tools/plot_motifs.py
cmonkey/tools/util.py
cmonkey2.egg-info/PKG-INFO
cmonkey2.egg-info/SOURCES.txt
cmonkey2.egg-info/dependency_links.txt
cmonkey2.egg-info/not-zip-safe
cmonkey2.egg-info/requires.txt
cmonkey2.egg-info/top_level.txt
test/testutil.py