LICENSE
README.md
pyproject.toml
src/jsrc/__init__.py
src/jsrc/cli.py
src/jsrc.egg-info/PKG-INFO
src/jsrc.egg-info/SOURCES.txt
src/jsrc.egg-info/dependency_links.txt
src/jsrc.egg-info/entry_points.txt
src/jsrc.egg-info/requires.txt
src/jsrc.egg-info/top_level.txt
src/jsrc/analyze/__init__.py
src/jsrc/analyze/bootstrap_phylo.py
src/jsrc/analyze/core.py
src/jsrc/analyze/motif.py
src/jsrc/analyze/msa_consensus.py
src/jsrc/analyze/phylo.py
src/jsrc/analyze/qc.py
src/jsrc/analyze/snpindel.py
src/jsrc/grn/__init__.py
src/jsrc/grn/centrality.py
src/jsrc/grn/convert.py
src/jsrc/grn/core.py
src/jsrc/grn/serve.py
src/jsrc/grn/viewer.py
src/jsrc/gs/__init__.py
src/jsrc/gs/build.py
src/jsrc/gs/split.py
src/jsrc/gs/train.py
src/jsrc/job/__init__.py
src/jsrc/job/commands.py
src/jsrc/plot/__init__.py
src/jsrc/plot/chromosome.py
src/jsrc/plot/circoslite.py
src/jsrc/plot/cis.py
src/jsrc/plot/core.py
src/jsrc/plot/domain.py
src/jsrc/plot/dotplot.py
src/jsrc/plot/exon.py
src/jsrc/plot/gene.py
src/jsrc/plot/heart.py
src/jsrc/plot/rose.py
src/jsrc/seq/__init__.py
src/jsrc/seq/codon.py
src/jsrc/seq/core.py
src/jsrc/seq/extract.py
src/jsrc/seq/kmer.py
src/jsrc/seq/promoter.py
src/jsrc/seq/qc.py
src/jsrc/seq/rename.py
src/jsrc/seq/translate.py
src/jsrc/seq/window.py
src/jsrc/vision/__init__.py
src/jsrc/vision/core.py
src/jsrc/vision/efd.py
src/jsrc/vision/extract.py
src/jsrc/vision/traits.py
tests/test_analyze_extra.py
tests/test_analyze_phylo.py
tests/test_cli_error_behavior.py
tests/test_cli_module_flows.py
tests/test_job_portability.py
tests/test_seq_codon_kmer.py
tests/test_seq_core.py
tests/test_seq_extract.py
tests/test_seq_promoter.py
tests/test_seq_qc.py
tests/test_seq_rename.py
tests/test_seq_translate.py
tests/test_seq_window.py