Metadata-Version: 1.2
Name: ms-mint
Version: 0.0.32
Summary: Metabolomics Integrator (Mint)
Home-page: https://github.com/soerendip/ms-mint
Author: Soren Wacker
Author-email: swacker@ucalgary.ca
License: UNKNOWN
Description: # MINT (Metabolomics Integrator)
        
        
        ![GUI](./docs/image/mint-overview.png "The GUI")
        
        MINT is an app for processing mzML and mzXML mass-spectrometry (MS) files in MS1 mode. Its main function is to sum up intensity values from usually pre-defined windows in m/z and scan-time (also called retention time) space. These windows can be provided in a `csv-file` or set programmatically. Therefore, a large number of MS-files can be processed in very standardized and reproducible manner.
        
        The tool can be used with a browser based graphical user interface (GUI) implemented as interactive dashboard with [Plotly-Dash](https://plot.ly/dash/). A second (experimental) GUI is available that runs integrated in a `Jupyter Notebook`. Alternatively, the `ms_mint` package can be imported as python library to be integrated in any Python script and processing pipeline to automate MS-file processing.
        
        More information on how to install and run the program can be found in the [Documentation](https://soerendip.github.io/ms-mint/).
        
        
        
        ## Download Latest release
        For Windows 10 a build is provided [here](https://github.com/soerendip/ms-mint/releases/latest)
        
        Simply, unpack the zip-archive and start `Mint.exe`. Then navigate to http://localhost:9999 if the browser does not open automatically.
        
        
        ## Installation
        
        ### Installation with pip
        
        The program can be installed in a Python 3 (>= 3.7) environment using `pip`:
        
            pip install ms-mint
        
        Then the GUI can be started with 
        
            Mint.py
        
        Then navigate to http://localhost:9999 if the browser does not open automatically.
        
        
        ### From source and creating windows executable
        
            git clone ...
            pip install -e . 
            pyinstaller --one-dir specfiles\Mint__onedir__.spec
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.5
