from .global_level import global_level
from .local_level import local_level
from .pseudotime import pseudotime
from .weight_optimization import weight_optimizing_global, weight_optimizing_local
from .utils import lambda_dist, resistance_distance
from .pseudotimespace import pseudotimespace_global, pseudotimespace_local
from .detect_transition_markers import (
    detect_transition_markers_clades,
    detect_transition_markers_branches,
)
from .compare_transitions import compare_transitions

from .set_root import set_root
