CREDITS.rst
INSTALL.rst
MANIFEST.in
README.rst
setup.py
doc/Makefile
doc/source/conf.py
doc/source/credits.rst
doc/source/index.rst
doc/source/install.rst
doc/source/publications.rst
doc/source/roi_buddy.rst
doc/source/support.rst
doc/source/tutorial.rst
doc/source/_templates/layout.html
doc/source/api/datasets.rst
doc/source/api/extract.rst
doc/source/api/index.rst
doc/source/api/motion.rst
doc/source/api/rois.rst
doc/source/api/segment.rst
doc/source/api/sequence.rst
doc/source/roi_buddy/File_Menu.csv
doc/source/roi_buddy/control_panel.csv
doc/source/roi_buddy/control_panel_initialize_sets.csv
doc/source/roi_buddy/control_panel_modes.csv
doc/source/roi_buddy/control_panel_registration.csv
doc/source/roi_buddy/control_panel_view_rois.csv
doc/source/roi_buddy/main_panel.jpg
doc/source/roi_buddy/overview.jpg
doc/source/themes/nature_with_gtoc/layout.html
doc/source/themes/nature_with_gtoc/theme.conf
doc/source/themes/nature_with_gtoc/static/nature.css_t
examples/extraction.py
examples/import_ImageJ_rois.py
examples/segmentation.py
examples/spikeinference.py
examples/transform_rois.py
examples/update_version.py
examples/workflow.py
sima/ROI.py
sima/__init__.py
sima/extract.py
sima/imaging.py
sima/imaging_parameters.py
sima/sequence.py
sima/spikes.py
sima.egg-info/PKG-INFO
sima.egg-info/SOURCES.txt
sima.egg-info/dependency_links.txt
sima.egg-info/requires.txt
sima.egg-info/top_level.txt
sima/misc/__init__.py
sima/misc/align.py
sima/misc/convert.py
sima/misc/imagej.py
sima/misc/tifffile.py
sima/motion/__init__.py
sima/motion/_motion.c
sima/motion/frame_align.py
sima/motion/hmm.py
sima/motion/motion.py
sima/motion/transform.py
sima/motion/tests/test_frame_align.py
sima/motion/tests/test_hmm.py
sima/motion/tests/test_motion.py
sima/segment/__init__.py
sima/segment/_opca.c
sima/segment/ca1pc.py
sima/segment/normcut.py
sima/segment/oPCA.py
sima/segment/segment.py
sima/segment/stica.py
sima/segment/tests/test_normcut.py
sima/segment/tests/test_oPCA.py
sima/segment/tests/test_segment.py
sima/tests/test_ROI.py
sima/tests/test_extract.py
sima/tests/test_imaging.py
sima/tests/test_sequence.py
sima/tests/test_spikes.py
sima/tests/data/example-volume.h5
sima/tests/data/example.h5
sima/tests/data/example.tif
sima/tests/data/imageJ_ROIs.zip
sima/tests/data/example-tiffs/0.tif
sima/tests/data/example-tiffs/1.tif
sima/tests/data/example-tiffs/2.tif
sima/tests/data/example.sima/dataset.pkl
sima/tests/data/example.sima/displacements.pkl
sima/tests/data/example.sima/opca_0.npz
sima/tests/data/example.sima/rois.pkl