README.md
setup.py
mskit/__info__.py
mskit/__init__.py
mskit/inherited_builtins.py
mskit.egg-info/PKG-INFO
mskit.egg-info/SOURCES.txt
mskit.egg-info/dependency_links.txt
mskit.egg-info/requires.txt
mskit.egg-info/top_level.txt
mskit/calc/__init__.py
mskit/calc/data_filter.py
mskit/calc/intensity.py
mskit/calc/mass_calc.py
mskit/config/__init__.py
mskit/config/chem_config.py
mskit/config/pepmod_config.py
mskit/constants/__init__.py
mskit/constants/aa.py
mskit/constants/base.py
mskit/constants/database.py
mskit/constants/enzyme.py
mskit/constants/mass.py
mskit/constants/mod.py
mskit/constants/rt.py
mskit/constants/xler.py
mskit/data_check/__init__.py
mskit/instrument/__init__.py
mskit/instrument/thermo.py
mskit/link_db/__init__.py
mskit/link_db/proteome_xchange.py
mskit/link_db/proteometools.py
mskit/link_db/uniprot.py
mskit/metric/__init__.py
mskit/metric/distance.py
mskit/metric/robust.py
mskit/metric/similarity.py
mskit/ms_pred/__init__.py
mskit/ms_pred/_deeprt_constant.py
mskit/ms_pred/_pdeep_constant.py
mskit/ms_pred/deep_phos.py
mskit/ms_pred/deep_phospho.py
mskit/ms_pred/deepms2.py
mskit/ms_pred/deeprt.py
mskit/ms_pred/pdeep.py
mskit/ms_pred/prosit.py
mskit/ms_pred/tf_utils.py
mskit/plot_kit/__init__.py
mskit/plot_kit/annotations/__init__.py
mskit/plot_kit/annotations/bar_anno.py
mskit/plot_kit/colors/__init__.py
mskit/plot_kit/colors/gradients.py
mskit/plot_kit/colors/precolors_grad.py
mskit/plot_kit/colors/preferred_colors.py
mskit/plot_kit/colors/trans_color_code.py
mskit/plot_kit/drawing_area/__init__.py
mskit/plot_kit/drawing_area/ax_utls.py
mskit/plot_kit/drawing_area/axes.py
mskit/plot_kit/figures/__init__.py
mskit/plot_kit/figures/read_and_trans.py
mskit/plot_kit/figures/save.py
mskit/plot_kit/plots/__init__.py
mskit/plot_kit/plots/cluster.py
mskit/plot_kit/plots/color_bar.py
mskit/plot_kit/plots/compare_bar.py
mskit/plot_kit/plots/count_bar.py
mskit/plot_kit/plots/cumu_bar.py
mskit/plot_kit/plots/heatmap.py
mskit/plot_kit/plots/mirror_plot.py
mskit/plot_kit/plots/pcc_hist.py
mskit/plot_kit/plots/rt_reg.py
mskit/plot_kit/plots/upset.py
mskit/post_analysis/__init__.py
mskit/post_analysis/comet.py
mskit/post_analysis/diann.py
mskit/post_analysis/go.py
mskit/post_analysis/mascot.py
mskit/post_analysis/maxquant.py
mskit/post_analysis/pfind.py
mskit/post_analysis/plink.py
mskit/post_analysis/proteome_discoverer.py
mskit/post_analysis/skyline.py
mskit/post_analysis/spectronaut.py
mskit/post_analysis/tracefinder.py
mskit/post_analysis/xwalk.py
mskit/post_analysis/_diann/__init__.py
mskit/post_analysis/_diann/diann_constants.py
mskit/post_analysis/_spectronaut/__init__.py
mskit/post_analysis/_spectronaut/lib_utils.py
mskit/post_analysis/_spectronaut/mod_process.py
mskit/post_analysis/_spectronaut/result_utils.py
mskit/post_analysis/_spectronaut/sn_constant.py
mskit/post_analysis/_spectronaut/sn_lib.py
mskit/post_analysis/_spectronaut/sn_phossite.py
mskit/post_analysis/_spectronaut/sn_result.py
mskit/post_analysis/_spectronaut/sn_utils.py
mskit/rapid_kit/__init__.py
mskit/rapid_kit/data_struc_kit.py
mskit/rapid_kit/dir_kit.py
mskit/rapid_kit/file_kit.py
mskit/rapid_kit/pd_kit.py
mskit/rapid_kit/sys_kit.py
mskit/rapid_kit/text_kit.py
mskit/sequence/__init__.py
mskit/sequence/_mod.py
mskit/sequence/decoy.py
mskit/sequence/fasta.py
mskit/sequence/gff.py
mskit/sequence/seq_future.py
mskit/sequence/ted.py
mskit/sequence/topo.py
mskit/stats/__init__.py
mskit/stats/rt_corr.py
mskit/stats/spec_similarity.py
mskit/transform/__init__.py
mskit/transform/modifications.py
mskit/transform/modifications/__init__.py
mskit/transform/modifications/add_mod_to_pep.py
mskit/transform/modifications/trans_modpep_format.py