r"""
.. currentmodule: deeptime.markov

===============================================================================
Transition counting and analysis tools
===============================================================================

.. autosummary::
    :toctree: generated/
    :template: class_nomodule.rst

    pcca
    PCCAModel

    TransitionCountEstimator
    TransitionCountModel

    ReactiveFlux
    compute_reactive_flux

    score_cv
"""

from . import tools  # former msmtools

from ._base import BayesianPosterior, _MSMBaseEstimator
from .pcca import pcca, PCCAModel
from .transition_counting import TransitionCountEstimator, TransitionCountModel

from .reactive_flux import ReactiveFlux, compute_reactive_flux

from ._base import score_cv
from . import msm
from . import hmm
