torch>=2.0
pandas>=2.0
numpy>=1.24
scikit-learn>=1.4
scanpy>=1.10
anndata>=0.10
lifelines>=0.28
networkx>=3.0
matplotlib>=3.8
seaborn>=0.13
scipy>=1.12
statsmodels>=0.14
pycomBat>=0.3
pyyaml>=6.0
typer>=0.9
rich>=13.0
tqdm>=4.66
GEOparse>=2.0

[dev]
pytest>=8.0
pytest-cov>=5.0
ruff>=0.4
