Metadata-Version: 2.1
Name: chipseqpeaks
Version: 0.0.9
Summary: Easy management of ChIP-seq peak calling
Home-page: https://github.com/anthony-aylward/chipseqpeaks.git
Author: Anthony Aylward, Joshua Chiou
Author-email: aaylward@eng.ucsd.edu
License: UNKNOWN
Description: # chipseqpeaks
        
        Easy management of ChIP-seq peak calling data
        
        A mini-module for managing ChIP-seq peak calling data. The language of this
        module treats "ChIP-seq peaks" as an abstraction, but mostly handles them as 
        MACS2 output stored in memory.
        
        ```
        Example
        -------
        import chipseqpeaks
        with chipseqpeaks.ChIPSeqPeaks(<bytes object or path to BAM file>) as cp:
            cp.cleans_up = False
            cp.remove_blacklisted_peaks(<path/to/blacklist.bed>)
            cp.write(<output prefix>)
        
        Classes
        -------
        ChIPSeqPeaks
            object representing ChIP-seq peaks
        
        Functions
        ---------
        parse_input
            check that an input is str or bytes and return the bam file as a bytes
            object
        ```
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
