AlphaDynamics
Copyright 2026 Krzysztof Gwozdz

This product includes software developed by Krzysztof Gwozdz
(krisss0gwo@gmail.com) as an independent researcher in Poland.

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ABOUT THE AUTHOR
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AlphaDynamics is the protein-dynamics application of a multi-year research
program on phase-oscillator computation, conducted by Krzysztof Gwozdz:

  1. REZON hardware system (2024-2025)
     80 physical phase oscillators on 8 PCBs, custom CUDA kernels
     (phase_reservoir_cuda.cu), Jetson Orin Nano integration:
     Jetson -> AD9850 (200 Hz anchor) -> PCB RC -> AD7606 -> Jetson.
     Llama / Bielik LLM integration via custom bindings.
     QUBO / Max-Cut / SAT benchmarks against quantum-computing primitives.

  2. phase-entanglement-rc (2024-2025)
     Formal phase computing: phase Turing machine, phase Hopfield,
     phase full adder, CNOT phase gates, dense associative memories,
     capacity studies. Published paper.

  3. phase-cnot-neuroscience (2025-2026)
     Biological validation on real local-field-potential ECEPHYS
     recordings (rats and humans), theta-gamma CNOT coupling,
     published paper.

  4. AlphaDynamics (2026)
     Application of phase-flow propagator dynamics to protein
     torsion (phi, psi) timeseries. Sequence-only, transferable,
     ~123K parameters, 2.39x lower JSD than Microsoft Timewarp on
     the canonical 4AA benchmark, 3/3 peptide wins.

The intuition behind AlphaDynamics' architectural choices (RK4 integration
horizon t_max=4.0, cnot/warmup settling time, anchor-frequency lock,
mixture-of-von-Mises emission, kappa clamp) does not come from generic
ML hyperparameter search - it comes from years of measured behavior of
80 physical phase oscillators in real time and from neuroscience
validation of theta-gamma coupling.

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USE OF THIS SOFTWARE
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This software is licensed under the Apache License, Version 2.0
(see the LICENSE file). You may freely use, modify, and distribute
this software, including for commercial purposes, provided you
preserve this NOTICE file and the copyright statement above in
any redistribution or derivative work, as required by Section 4
of the Apache 2.0 license.

If you use AlphaDynamics in academic work, please cite it (see
CITATION.cff). Citation is a community norm, not a legal requirement.

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CONTACT
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Krzysztof Gwozdz
krisss0gwo@gmail.com
https://github.com/krisss0mecom/AlphaDynamics
