[console_scripts]
phykit = phykit.phykit:main
pk_al = phykit.phykit:alignment_length
pk_alignment_length = phykit.phykit:alignment_length
pk_alignment_length_no_gaps = phykit.phykit:alignment_length_no_gaps
pk_aln_len = phykit.phykit:alignment_length
pk_aln_len_no_gaps = phykit.phykit:alignment_length_no_gaps
pk_alng = phykit.phykit:alignment_length_no_gaps
pk_bipartition_support_stats = phykit.phykit:bipartition_support_stats
pk_blm = phykit.phykit:branch_length_multiplier
pk_branch_length_multiplier = phykit.phykit:branch_length_multiplier
pk_bss = phykit.phykit:bipartition_support_stats
pk_cb = phykit.phykit:collapse_branches
pk_cc = phykit.phykit:create_concatenation_matrix
pk_collapse = phykit.phykit:collapse_branches
pk_collapse_branches = phykit.phykit:collapse_branches
pk_column_score = phykit.phykit:column_score
pk_covarying_evolutionary_rates = phykit.phykit:covarying_evolutionary_rates
pk_cover = phykit.phykit:covarying_evolutionary_rates
pk_create_concat = phykit.phykit:create_concatenation_matrix
pk_create_concatenation_matrix = phykit.phykit:create_concatenation_matrix
pk_cs = phykit.phykit:column_score
pk_degree_of_violation_of_a_molecular_clock = phykit.phykit:dvmc
pk_dvmc = phykit.phykit:dvmc
pk_evo_rate = phykit.phykit:evolutionary_rate
pk_evolutionary_rate = phykit.phykit:evolutionary_rate
pk_faidx = phykit.phykit:faidx
pk_gc = phykit.phykit:gc_content
pk_gc_content = phykit.phykit:gc_content
pk_ge = phykit.phykit:faidx
pk_get_entry = phykit.phykit:faidx
pk_ibs = phykit.phykit:internal_branch_stats
pk_il = phykit.phykit:internode_labeler
pk_internal_branch_stats = phykit.phykit:internal_branch_stats
pk_internode_labeler = phykit.phykit:internode_labeler
pk_labels = phykit.phykit:tip_labels
pk_last_common_ancestor_subtree = phykit.phykit:last_common_ancestor_subtree
pk_lb_score = phykit.phykit:lb_score
pk_lbs = phykit.phykit:lb_score
pk_lca_subtree = phykit.phykit:last_common_ancestor_subtree
pk_long_branch_score = phykit.phykit:lb_score
pk_p2n = phykit.phykit:thread_dna
pk_pairwise_id = phykit.phykit:pairwise_identity
pk_pairwise_identity = phykit.phykit:pairwise_identity
pk_pal2nal = phykit.phykit:thread_dna
pk_parsimony_informative_sites = phykit.phykit:parsimony_informative_sites
pk_patristic_distances = phykit.phykit:patristic_distances
pk_pd = phykit.phykit:patristic_distances
pk_pi = phykit.phykit:pairwise_identity
pk_pis = phykit.phykit:parsimony_informative_sites
pk_polyt = phykit.phykit:polytomy_test
pk_polyt_test = phykit.phykit:polytomy_test
pk_polytomy_test = phykit.phykit:polytomy_test
pk_print = phykit.phykit:print_tree
pk_print_tree = phykit.phykit:print_tree
pk_prune = phykit.phykit:prune_tree
pk_prune_tree = phykit.phykit:prune_tree
pk_pt = phykit.phykit:print_tree
pk_ptt = phykit.phykit:polytomy_test
pk_rcv = phykit.phykit:rcv
pk_rel_comp_var = phykit.phykit:rcv
pk_relative_composition_variability = phykit.phykit:rcv
pk_rename_fasta = phykit.phykit:rename_fasta_entries
pk_rename_fasta_entries = phykit.phykit:rename_fasta_entries
pk_rename_tips = phykit.phykit:rename_tree_tips
pk_rename_tree = phykit.phykit:rename_tree_tips
pk_rename_tree_tips = phykit.phykit:rename_tree_tips
pk_rf = phykit.phykit:rf_distance
pk_rf_dist = phykit.phykit:rf_distance
pk_rf_distance = phykit.phykit:rf_distance
pk_robinson_foulds_distance = phykit.phykit:rf_distance
pk_sat = phykit.phykit:saturation
pk_saturation = phykit.phykit:saturation
pk_sop = phykit.phykit:sum_of_pairs_score
pk_sops = phykit.phykit:sum_of_pairs_score
pk_spurious_seq = phykit.phykit:spurious_sequence
pk_spurious_sequence = phykit.phykit:spurious_sequence
pk_ss = phykit.phykit:spurious_sequence
pk_sum_of_pairs_score = phykit.phykit:sum_of_pairs_score
pk_thread_dna = phykit.phykit:thread_dna
pk_tip_labels = phykit.phykit:tip_labels
pk_tl = phykit.phykit:tip_labels
pk_tness = phykit.phykit:treeness
pk_tor = phykit.phykit:treeness_over_rcv
pk_total_tree_length = phykit.phykit:total_tree_length
pk_toverr = phykit.phykit:treeness_over_rcv
pk_tree_labels = phykit.phykit:tip_labels
pk_tree_len = phykit.phykit:total_tree_length
pk_treeness = phykit.phykit:treeness
pk_treeness_over_rcv = phykit.phykit:treeness_over_rcv
pk_variable_sites = phykit.phykit:variable_sites
pk_vs = phykit.phykit:variable_sites

