numpy>=1.21
pandas>=1.3
anndata>=0.9
scipy>=1.7
scanpy>=1.9
geopandas>=0.10
shapely>=2.0
pillow>=9.0
tifffile>=2021.0
matplotlib>=3.5
seaborn>=0.11
flask>=3.0
anthropic>=0.18
openai>=1.12
pyyaml>=6.0

[dev]
pytest>=7.0
pytest-asyncio>=0.23
ruff>=0.1

[skills]
squidpy>=1.2
gseapy>=1.0
liana
cellphonedb<6.0,>=5.0
plotnine>=0.12
harmonypy>=0.0.9
scvi-tools<2.0,>=1.0
qpsolvers>=4.0
ray>=2.0
NaiveDE>=0.1
SpatialDE>=1.1
torch>=2.0
SpaGCN>=1.2.5
nrrd>=1.0
