LICENSE
MANIFEST.in
README.md
environment.yml
pyproject.toml
setup.py
/home/runner/work/pyalign/pyalign/pyalign/algorithm/module.cpp
pyalign/__init__.py
pyalign/_version.py
pyalign/cpu.py
pyalign/gaps.py
pyalign/simple.py
pyalign/solve.py
pyalign.egg-info/PKG-INFO
pyalign.egg-info/SOURCES.txt
pyalign.egg-info/dependency_links.txt
pyalign.egg-info/requires.txt
pyalign.egg-info/top_level.txt
pyalign/algorithm/__init__.py
pyalign/algorithm/common.h
pyalign/algorithm/enum.h
pyalign/algorithm/factory.h
pyalign/algorithm/module.cpp
pyalign/algorithm/options.h
pyalign/algorithm/pyalign.h
pyalign/algorithm/solver.h
pyalign/io/__init__.py
pyalign/io/alignment.py
pyalign/io/plot.py
pyalign/problems/__init__.py
pyalign/problems/factory.py
pyalign/problems/function.py
pyalign/problems/instance.py
pyalign/tests/__init__.py
pyalign/tests/test_batch.py
pyalign/tests/test_gotoh.py
pyalign/tests/test_nw.py
pyalign/tests/test_sw.py
pyalign/tests/test_wsb.py