MANIFEST.in
README.md
setup.py
gemelli/__init__.py
gemelli/_defaults.py
gemelli/base.py
gemelli/citations.bib
gemelli/ctf.py
gemelli/factorization.py
gemelli/matrix_completion.py
gemelli/optspace.py
gemelli/preprocessing.py
gemelli/rpca.py
gemelli/simulations.py
gemelli/testing.py
gemelli.egg-info/PKG-INFO
gemelli.egg-info/SOURCES.txt
gemelli.egg-info/dependency_links.txt
gemelli.egg-info/entry_points.txt
gemelli.egg-info/not-zip-safe
gemelli.egg-info/requires.txt
gemelli.egg-info/top_level.txt
gemelli/q2/__init__.py
gemelli/q2/_format.py
gemelli/q2/_transformer.py
gemelli/q2/_type.py
gemelli/q2/plugin_setup.py
gemelli/q2/tests/__init__.py
gemelli/q2/tests/test_data_transformations.py
gemelli/q2/tests/test_format.py
gemelli/q2/tests/test_method.py
gemelli/q2/tests/test_optspace.py
gemelli/q2/tests/test_rpca_method.py
gemelli/q2/tests/test_transformer.py
gemelli/q2/tests/data/context-distance-matrix.tsv
gemelli/q2/tests/data/context-features-ordination.tsv
gemelli/q2/tests/data/context-ordination.txt
gemelli/q2/tests/data/context-subject-ordination.tsv
gemelli/q2/tests/data/distance-matrix.tsv
gemelli/q2/tests/data/ordination.txt
gemelli/q2/tests/data/phylo-table.biom
gemelli/q2/tests/data/phylogenetic-count-table.biom
gemelli/q2/tests/data/phylogenetic-rclr-table.biom
gemelli/q2/tests/data/phylogenetic-table.biom
gemelli/q2/tests/data/rclr-table.biom
gemelli/q2/tests/data/rclr-test.biom
gemelli/q2/tests/data/subject-phylogenetic-table.biom
gemelli/q2/tests/data/test-large.biom
gemelli/q2/tests/data/test-large.tsv
gemelli/q2/tests/data/test-small.biom
gemelli/q2/tests/data/test-small.tsv
gemelli/q2/tests/data/test-smallest.biom
gemelli/q2/tests/data/test-smallest.tsv
gemelli/q2/tests/data/test.biom
gemelli/q2/tests/data/trajectory-invalid-header.tsv
gemelli/q2/tests/data/trajectory-non-numeric.tsv
gemelli/q2/tests/data/trajectory.tsv
gemelli/scripts/__init__.py
gemelli/scripts/_standalone_ctf.py
gemelli/scripts/_standalone_rpca.py
gemelli/scripts/_standalone_transforms.py
gemelli/scripts/tests/__init__.py
gemelli/scripts/tests/test_standalone_ctf.py
gemelli/scripts/tests/test_standalone_rpca.py
gemelli/scripts/tests/test_standalone_transforms.py
gemelli/scripts/tests/data/context-distance-matrix.tsv
gemelli/scripts/tests/data/context-features-ordination.tsv
gemelli/scripts/tests/data/context-ordination.txt
gemelli/scripts/tests/data/context-subject-ordination.tsv
gemelli/scripts/tests/data/expected-context-distance-matrix.tsv
gemelli/scripts/tests/data/expected-context-features-ordination.tsv
gemelli/scripts/tests/data/expected-context-ordination.txt
gemelli/scripts/tests/data/expected-context-subject-ordination.tsv
gemelli/scripts/tests/data/expected-ordination.txt
gemelli/scripts/tests/data/expected-phylo-context-distance-matrix.tsv
gemelli/scripts/tests/data/expected-phylo-context-features-ordination.tsv
gemelli/scripts/tests/data/expected-phylo-context-ordination.txt
gemelli/scripts/tests/data/expected-phylo-context-subject-ordination.tsv
gemelli/scripts/tests/data/expected-phylo-ordination.txt
gemelli/scripts/tests/data/expected-phylo-phylogenetic-table.biom
gemelli/scripts/tests/data/expected-phylo-subject-phylogenetic-table.biom
gemelli/scripts/tests/data/expected-phylo-table.biom
gemelli/scripts/tests/data/ordination.txt
gemelli/scripts/tests/data/phylogenetic-table.biom
gemelli/scripts/tests/data/subject-phylogenetic-table.biom
gemelli/scripts/tests/data/test-large.biom
gemelli/scripts/tests/data/test-large.tsv
gemelli/scripts/tests/data/test-small copy.tsv
gemelli/scripts/tests/data/test-small.biom
gemelli/scripts/tests/data/test-small.tsv
gemelli/scripts/tests/data/New Folder With Items/expected-context-distance-matrix.tsv
gemelli/scripts/tests/data/New Folder With Items/expected-context-features-ordination.tsv
gemelli/scripts/tests/data/New Folder With Items/expected-context-ordination.txt
gemelli/scripts/tests/data/New Folder With Items/expected-context-subject-ordination.tsv
gemelli/scripts/tests/data/New Folder With Items/expected-ordination.txt
gemelli/scripts/tests/data/New Folder With Items/expected-phylo-context-distance-matrix.tsv
gemelli/scripts/tests/data/New Folder With Items/expected-phylo-context-features-ordination.tsv
gemelli/scripts/tests/data/New Folder With Items/expected-phylo-context-ordination.txt
gemelli/scripts/tests/data/New Folder With Items/expected-phylo-context-subject-ordination.tsv
gemelli/scripts/tests/data/New Folder With Items/expected-phylo-ordination.txt
gemelli/scripts/tests/data/New Folder With Items/expected-phylo-phylogenetic-table.biom
gemelli/scripts/tests/data/New Folder With Items/expected-phylo-subject-phylogenetic-table.biom
gemelli/scripts/tests/data/New Folder With Items/expected-phylo-table.biom
gemelli/scripts/tests/data/New Folder With Items/prev-expected-phylo-context-features-ordination.tsv
gemelli/scripts/tests/data/New Folder With Items/prev-expected-phylo-context-subject-ordination.tsv
gemelli/scripts/tests/rpca_data/distance-matrix.tsv
gemelli/scripts/tests/rpca_data/expected-distance-matrix.tsv
gemelli/scripts/tests/rpca_data/expected-est-distance-matrix.tsv
gemelli/scripts/tests/rpca_data/expected-est-ordination.txt
gemelli/scripts/tests/rpca_data/expected-ordination.txt
gemelli/scripts/tests/rpca_data/expected-phylo-distance-matrix.tsv
gemelli/scripts/tests/rpca_data/expected-phylo-ordination.txt
gemelli/scripts/tests/rpca_data/expected-phylo-table.biom
gemelli/scripts/tests/rpca_data/expected-phylogenetic-count-table.biom
gemelli/scripts/tests/rpca_data/expected-phylogenetic-rclr-table.biom
gemelli/scripts/tests/rpca_data/ordination.txt
gemelli/scripts/tests/rpca_data/phylo-table.biom
gemelli/scripts/tests/rpca_data/phylogenetic-count-table.biom
gemelli/scripts/tests/rpca_data/phylogenetic-rclr-table.biom
gemelli/scripts/tests/rpca_data/rclr-table.biom
gemelli/scripts/tests/rpca_data/rclr-test.biom
gemelli/scripts/tests/rpca_data/test.biom
gemelli/tests/test_base.py
gemelli/tests/test_factorization.py
gemelli/tests/test_optspace.py
gemelli/tests/test_preprocessing.py
gemelli/tests/test_tenals.py
gemelli/tests/data/large_test.mat
gemelli/tests/data/small_test.mat