MANIFEST.in
README.md
setup.cfg
setup.py
ScaleHD/__allelecontainer.py
ScaleHD/__backend.py
ScaleHD/__init__.py
ScaleHD/__main__.py
ScaleHD/sherpa.py
ScaleHD.egg-info/PKG-INFO
ScaleHD.egg-info/SOURCES.txt
ScaleHD.egg-info/dependency_links.txt
ScaleHD.egg-info/entry_points.txt
ScaleHD.egg-info/requires.txt
ScaleHD.egg-info/top_level.txt
ScaleHD/align/__alignment.py
ScaleHD/align/__atypical.py
ScaleHD/align/__init__.py
ScaleHD/config/config.dtd
ScaleHD/genHTML/__generateHTML.py
ScaleHD/genHTML/__init__.py
ScaleHD/genHTML/chartBase.js
ScaleHD/genHTML/chartBoxPlot.js
ScaleHD/genHTML/chartZoom.js
ScaleHD/genHTML/gridism.css
ScaleHD/genHTML/jquery.js
ScaleHD/genHTML/msa.js
ScaleHD/genHTML/scalehd.css
ScaleHD/genHTML/scalehd.js
ScaleHD/genHTML/tablefilter.js
ScaleHD/genHTML/templates/alleletable.html
ScaleHD/genHTML/templates/base.html
ScaleHD/genHTML/templates/fastqc.html
ScaleHD/genHTML/templates/list.html
ScaleHD/genHTML/templates/seqALN.html
ScaleHD/genHTML/templates/seqGTYPE.html
ScaleHD/genHTML/templates/seqqc.html
ScaleHD/genHTML/templates/sequencedata.html
ScaleHD/genHTML/templates/trim.html
ScaleHD/predict/__init__.py
ScaleHD/predict/__prediction.py
ScaleHD/predict/__snpcalling.py
ScaleHD/seq_qc/__init__.py
ScaleHD/seq_qc/__quality_control.py
ScaleHD/train/likelihood_matrix.csv
ScaleHD/train/long_descr.rst
ScaleHD/train/polyglutamine.csv
ScaleHD/train/raw_matrix.csv