LICENSE
MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
metapi/__about__.py
metapi/__init__.py
metapi/aligner.py
metapi/assembler.py
metapi/binner.py
metapi/checkmer.py
metapi/classifier.py
metapi/configer.py
metapi/corer.py
metapi/profiler.py
metapi/qcer.py
metapi/sampler.py
metapi/simulator.py
metapi/tooler.py
metapi/uploader.py
metapi.egg-info/PKG-INFO
metapi.egg-info/SOURCES.txt
metapi.egg-info/dependency_links.txt
metapi.egg-info/entry_points.txt
metapi.egg-info/requires.txt
metapi.egg-info/top_level.txt
metapi/config/cluster.yaml
metapi/config/config.yaml
metapi/envs/bioenv2.yaml
metapi/envs/bioenv3.6.yaml
metapi/envs/bioenv3.7.yaml
metapi/rules/alignment.smk
metapi/rules/assembly.smk
metapi/rules/binning.smk
metapi/rules/checkm.smk
metapi/rules/classify.smk
metapi/rules/coalignment.smk
metapi/rules/coassembly.smk
metapi/rules/cobinning.smk
metapi/rules/cocheckm.smk
metapi/rules/coclassify.smk
metapi/rules/copredict_bins.smk
metapi/rules/copredict_scaftigs.smk
metapi/rules/dereplicate_cds.smk
metapi/rules/dereplicate_mags.smk
metapi/rules/predict_bins.smk
metapi/rules/predict_scaftigs.smk
metapi/rules/profiling.smk
metapi/rules/qcreport.smk
metapi/rules/raw.smk
metapi/rules/rmhost.smk
metapi/rules/simulate.smk
metapi/rules/trimming.smk
metapi/rules/upload.smk
metapi/snakefiles/gene_wf.smk
metapi/snakefiles/mag_wf.smk
metapi/wrappers/humann2_db_wrapper.py
metapi/wrappers/humann2_postprocess_wrapper.py
metapi/wrappers/humann3_db_wrapper.py
metapi/wrappers/humann3_postprocess_wrapper.py
metapi/wrappers/metaphlan2_wrapper.py