LICENSE
MANIFEST.in
README.md
pyproject.toml
figures/Benchmark.py
figures/figure_tools.py
figures/semantic_colormap.py
figures/tools.py
figures/Epochs_Evaluation/predict_epochs.py
figures/OldFigure/eval_bakcground_loss.py
figures/OldFigure/figure_3.py
figures/OldFigure/tools.py
figures/figure_1/eval_gtseg_semseg.py
figures/figure_2/closure_effect.py
figures/figure_2/closure_effect_3D.py
figures/figure_5/Compute_CellPose.py
morphodeep/__init__.py
morphodeep/config.py
morphodeep/model_core.py
morphodeep/napari.yaml
morphodeep/paths.py
morphodeep.egg-info/PKG-INFO
morphodeep.egg-info/SOURCES.txt
morphodeep.egg-info/dependency_links.txt
morphodeep.egg-info/entry_points.txt
morphodeep.egg-info/requires.txt
morphodeep.egg-info/top_level.txt
morphodeep/DataManagement/Compute_Semantic_From_Omero.py
morphodeep/DataManagement/extract_Arabidopsis.py
morphodeep/DataManagement/extract_CElegans.py
morphodeep/DataManagement/extract_CellPose.py
morphodeep/DataManagement/extract_Phallusia.py
morphodeep/DataManagement/extract_PlantSeg.py
morphodeep/DataManagement/extract_SeaStar.py
morphodeep/DataManagement/predict_cellpose.py
morphodeep/DataManagement/predict_plantseg.py
morphodeep/DataManagement/predict_semantic.py
morphodeep/DataManagement/rename.py
morphodeep/DataManagement/resize_scratch.py
morphodeep/DataManagement/store_data.py
morphodeep/DataManagement/sync_data.py
morphodeep/JobManagement/relaunch.py
morphodeep/JobManagement/sync_from_jz.py
morphodeep/JobManagement/tar_networks.py
morphodeep/JobManagement/tar_scratch.py
morphodeep/napari/__init__.py
morphodeep/napari/_widget.py
morphodeep/napari/get_model.py
morphodeep/napari/model.py
morphodeep/networks/ResUNet.py
morphodeep/networks/__init__.py
morphodeep/networks/losses.py
morphodeep/networks/metrics.py
morphodeep/networks/pixtopix.py
morphodeep/networks/pixtosem.py
morphodeep/networks/unet.py
morphodeep/networks/unetpp.py
morphodeep/networks/unettopix.py
morphodeep/test/nuclei_watershed.py
morphodeep/test/predict_cellpose.py
morphodeep/test/predict_semantic_file.py
morphodeep/test/predict_semantic_path.py
morphodeep/test/prepare_package.py
morphodeep/test/remove.py
morphodeep/test/renampe.py
morphodeep/test/renome_cellpose.py
morphodeep/test/set_metadata.py
morphodeep/test/CellPose-SAM/predict_cellpose-SAM.py
morphodeep/tools/__init__.py
morphodeep/tools/examples.py
morphodeep/tools/ground_truth.py
morphodeep/tools/image.py
morphodeep/tools/plot.py
morphodeep/tools/setdata.py
morphodeep/tools/utils.py
tests/__init__.py
tests/test_widget.py