# Custom ignores
.vscode
**/.DS_Store
data/*
mytests
private_tests
outreach
notebooks/test.ipynb
notebooks/Untitled-1.ipynb
spotmax/qtest.py
spotmax/test.py
spotmax/test1.py
spotmax/deprecated.py
spotmax/docs/deprecated.py
spotmax/_version.py
spotmax/_tests
spotmax/docs/_build
spotmax/_nnet
spotmax/BioImageIO/SpotMAX_UNet_2D/unet_best.pth
spotmax/BioImageIO/example_models
spotmax/BioImageIO/SpotMAX_UNet_2D/Input_sample_Positions
spotmax/BioImageIO/SpotMAX_UNet_2D/SpotMAX_AI_2D.zip
spotmax/BioImageIO/SpotMAX_UNet_2D/SpotMAX_AI_2D.zip.unzip
spotmax/BioImageIO/SpotMAX_UNet_3D/Input_sample_Positions
spotmax/BioImageIO/SpotMAX_UNet_3D/SpotMAX_AI_3D.zip
spotmax/BioImageIO/SpotMAX_UNet_3D/best_checkpoint.pytorch
spotmax/_deprecated
spotmax/docs/requirements_no_cellacdc.txt
spotmax/_old_gui.py
spotmax/mytests/*
# spotmax/BioImageIO/SpotMAX_UNet_2D
# spotmax/BioImageIO/SpotMAX_UNet_3D
spotmax/_deprecated_qrc_resources_spotmax.py
spotmax/spotmax_v1_paramWin.png
spotmax/spotmax_v2_parameters.png
spotmax/nnet/models/deprecated_pytorch3dunet
spotmax/docs/source/tutorials/data
spotmax/docs/source/images/home_carousel/svgs
spotmax/resources/_deprecated_icons
examples/notebooks/bioimageio_models
deprecated
cuda-keyring_1.1-1_all.deb
**/checkpoints
_tests
.setup.cfg
setup.cfg
*.deb

spotmax/logs/*
!spotmax/logs/dummy.txt

spotmax/settings/*
!spotmax/settings/dummy.txt

spotmax/docs/source/tutorials/*
!spotmax/docs/source/tutorials/_preliminary_segment_cells.rst
!spotmax/docs/source/tutorials/index.rst
!spotmax/docs/source/tutorials/mtDNA_yeast.rst
!spotmax/docs/source/tutorials/smFISH_yeast.rst

tutorials

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
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lib/
lib64/
parts/
sdist/
var/
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share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
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# Installer logs
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# Unit test / coverage reports
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.coverage
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.cache
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*.cover
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.hypothesis/
.pytest_cache/

# Translations
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# Django stuff:
*.log
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db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
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# Sphinx documentation
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# PyBuilder
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# Jupyter Notebook
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# IPython
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# pyenv
.python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
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#   having no cross-platform support, pipenv may install dependencies that don't work, or not
#   install all needed dependencies.
#Pipfile.lock

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__pypackages__/

# Celery stuff
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# Environments
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venv/
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venv.bak/

# Spyder project settings
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# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
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dmypy.json

# Pyre type checker
.pyre/
