Metadata-Version: 2.1
Name: episcanpy
Version: 0.3.2
Summary: Epigenomics Single-Cell Analysis in Python.
Home-page: http://github.com/colomemaria/epiScanpy
Author: Anna Danese, Maria Richter, Kridsadakorn Chaichoompu
Author-email: anna.danese@helmholtz-muenchen.de, chaichoompu@helmholtz-muenchen.de
License: BSD
Description: 
        EpiScanpy – Epigenomics single cell analysis in python
        ======================================================
        
        **EpiScanpy** is a toolkit to analyse single-cell open chromatin (scATAC-seq) and single-cell DNA methylation (for example scBS-seq) data. **EpiScanpy** is the epigenomic extension of the very popular scRNA-seq analysis tool **Scanpy** (`Genome Biology <https://doi.org/10.1186/s13059-017-1382-0>`__, 2018) [Wolf18]. For more information on scanpy, read the `documentation <https://scanpy.readthedocs.io>`__. 
        
        EpiScanpy paper is now accessible on `Nature Communications <https://www.nature.com/articles/s41467-021-25131-3>`__. For more information on how to use the package, more information are available on the`website <https://colomemaria.github.io/episcanpy_doc>`__. 
        
        
        .. start-badges
        
        .. list-table::
            :stub-columns: 1
        
            * - Releases
              - | |GitHub release| |GitHub tag| |PyPI|
            * - Build status via Conda
              - | |Conda-Linux| 
            * - Python versions
              - | |py39| |py38| |py37| |py36| |py27| 
            * - Operating System
              - | |ubuntu-20.04| |macOS Catalina| |windows-latest|
            * - Document status
              - | |Docs|
            * - Github status
              - | |GitHub contributors| |GitHub stars| |GitHub forks| |GitHub watchers| |GitHub followers| 
        
        .. |Docs| image:: https://readthedocs.com/projects/icb-scanpy/badge/?version=latest
           :target: https://episcanpy.readthedocs.io/en/latest/
        .. |PyPI| image:: https://img.shields.io/pypi/v/episcanpy.svg
            :target: https://pypi.org/project/episcanpy
        .. |py27| image:: https://github.com/colomemaria/epiScanpy/workflows/py27/badge.svg
            :target: https://github.com/colomemaria/epiScanpy/
        .. |py36| image:: https://github.com/colomemaria/epiScanpy/workflows/py36/badge.svg
            :target: https://github.com/colomemaria/epiScanpy/
        .. |py37| image:: https://github.com/colomemaria/epiScanpy/workflows/py37/badge.svg
            :target: https://github.com/colomemaria/epiScanpy/
        .. |py38| image:: https://github.com/colomemaria/epiScanpy/workflows/py38/badge.svg
            :target: https://github.com/colomemaria/epiScanpy/
        .. |py39| image:: https://github.com/colomemaria/epiScanpy/workflows/py39/badge.svg
            :target: https://github.com/colomemaria/epiScanpy/
        .. |ubuntu-20.04| image:: https://github.com/colomemaria/epiScanpy/workflows/ubuntu-20.04/badge.svg
            :target: https://github.com/colomemaria/epiScanpy/
        .. |macOS Catalina| image:: https://github.com/colomemaria/epiScanpy/workflows/macOS%20Catalina/badge.svg
            :target: https://github.com/colomemaria/epiScanpy/
        .. |windows-latest| image:: https://github.com/colomemaria/epiScanpy/workflows/windows-latest/badge.svg
            :target: https://github.com/colomemaria/epiScanpy/
        .. |Conda-Linux| image:: https://github.com/colomemaria/epiScanpy/workflows/Conda-Linux/badge.svg
            :target: https://github.com/colomemaria/epiScanpy/
        .. |GitHub release| image:: https://img.shields.io/github/release/colomemaria/epiScanpy.svg
           :target: https://GitHub.com/colomemaria/epiScanpy/releases/
        .. |GitHub tag| image:: https://img.shields.io/github/tag/colomemaria/epiScanpy.svg
           :target: https://GitHub.com/colomemaria/epiScanpy/tags/
        .. |GitHub forks| image:: https://img.shields.io/github/forks/colomemaria/epiScanpy.svg?style=social&label=Fork&maxAge=2592000
           :target: https://GitHub.com/colomemaria/epiScanpy/network/   
        .. |GitHub stars| image:: https://img.shields.io/github/stars/colomemaria/epiScanpy.svg?style=social&label=Star&maxAge=2592000
           :target: https://GitHub.com/colomemaria/epiScanpy/stargazers/
        .. |GitHub watchers| image:: https://img.shields.io/github/watchers/colomemaria/epiScanpy.svg?style=social&label=Watch&maxAge=2592000
           :target: https://GitHub.com/colomemaria/epiScanpy/watchers/
        .. |GitHub followers| image:: https://img.shields.io/github/followers/colomemaria.svg?style=social&label=Follow&maxAge=2592000
           :target: https://GitHub.com/colomemaria?tab=followers
        .. |GitHub contributors| image:: https://img.shields.io/github/contributors/colomemaria/epiScanpy.svg
           :target: https://GitHub.com/colomemaria/epiScanpy/graphs/contributors/
        
        Documentation
        =============
        The documentation for epiScanpy is available `here <https://episcanpy.readthedocs.io/en/latest/>`__. If epiScanpy is useful to your research, consider citing `epiScanpy <https://www.biorxiv.org/content/10.1101/648097v1>`__.
        
        
        
        
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Framework :: Jupyter
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Visualization
Requires-Python: >=3.5
Provides-Extra: louvain
Provides-Extra: leiden
Provides-Extra: bbknn
Provides-Extra: combat
Provides-Extra: doc
Provides-Extra: test
