anndata>=0.7
scanpy>=1.7.0
matplotlib>=3.1.2
pandas>=0.21
scipy>=1.4
seaborn
h5py>=2.10.0
scikit-learn>=0.21.2
statsmodels>=0.10.0rc2
networkx
natsort
joblib
numba>=0.50.0
numpy>=1.21.2
bamnostic>=1.0.12
umap-learn>=0.3.10
tqdm
tbb
legacy-api-wrap
setuptools_scm
packaging
h5py

[:platform_system != "Windows"]
pysam

[:python_version < "3.8"]
importlib_metadata>=0.7

[bbknn]
bbknn

[combat]
patsy

[doc]
sphinx
sphinx_rtd_theme
sphinx_autodoc_typehints
scanpydoc

[leiden]
python-igraph
leidenalg

[louvain]
python-igraph
louvain>=0.6

[test]
pytest
