from .utils import preprocess, apply_dim_reduct, evaluate_clusters, plot_umap, apply_dim_reduct_inference
from .sparse_encoding import sparse_encoding_integration, run_cell_inference, run_OCAT, AnchorGraph, tune_hyperparameters
from .marker_gene import calculate_marker_gene
from .lineage import compute_ptime, compute_lineage, plot_lineage_ptime
