Metadata-Version: 1.1
Name: varcode
Version: 0.3.6
Summary: Variant annotation in Python
Home-page: https://github.com/hammerlab/varcode
Author: Alex Rubinsteyn
Author-email: UNKNOWN
License: http://www.apache.org/licenses/LICENSE-2.0.html
Description: Varcode
        =======
        
        Varcode is a Python library for predicting the impact of genomic
        variants on protein sequences.
        
        Effect Types
        ------------
        
        -  Intergenic
        -  Intragenic
        -  IncompleteTranscript
        -  NoncodingTranscript
        -  Intronic
        -  ThreePrimeUTR
        -  FivePrimeUTR
        -  Silent
        -  Substitution
        -  Insertion
        -  Deletion
        -  ComplexSubstitution
        -  AlternateStartCodon
        -  IntronicSpliceSite
        -  ExonicSpliceSite
        -  StopLoss
        -  SpliceDonor
        -  SpliceAcceptor
        -  PrematureStop
        -  FrameShiftTruncation
        -  StartLoss
        -  FrameShift
        -  ExonLoss
        
        Coordinate System
        -----------------
        
        Varcode currently uses a "base counted, one start" genomic coordinate
        system, to match the Ensembl annotation database. We are planning to
        switch over to "space counted, zero start" (interbase) coordinates,
        since that system allows for more uniform logic (no special cases for
        insertions). To learn more about genomic coordinate systems, read this
        `blog
        post <http://alternateallele.blogspot.com/2012/03/genome-coordinate-conventions.html>`__.
        
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Environment :: Console
Classifier: Operating System :: OS Independent
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
