COPYING
MANIFEST.in
README
VERSION
setup.cfg
setup.py
bin/.gitignore
bin/HCDiffScanner
bin/asciiScore
bin/bamScoreTest
bin/blast2gff
bin/blastInfo
bin/blastReport
bin/cljson
bin/fastQkmercheck
bin/fasta2gff
bin/fastaExtract
bin/fastaExtractMerge
bin/fastaInfo
bin/fastaNfinder
bin/fastaSplitter
bin/gap4ExportContig
bin/gbrowserm
bin/generateApacheConf
bin/gffCombine
bin/gffPP
bin/invertGff
bin/lJoin
bin/mao
bin/mapPairInfo
bin/mapPairPlotter
bin/moa
bin/moaTemplateCheck
bin/moainit
bin/moaprompt
bin/r2
bin/r22fasta
bin/r2cut
bin/r2filter
bin/removeFromGbrowse
bin/scaffolder
bin/seqSplitLink
bin/urlsplit
etc/apache.conf.jinja2
etc/config
etc/moa.conf.mk
etc/bash_completion.d/moa
lib/gnumake/__core.mk
lib/gnumake/__prepare.mk
lib/gnumake/core.mk
lib/gnumake/execute.mk
lib/gnumake/getPluginList.mk
lib/gnumake/prepare.mk
lib/gnumake/plugins/adhoc.mk
lib/gnumake/plugins/fileset.mk
lib/gnumake/plugins/info.mk
lib/gnumake/plugins/pack.mk
lib/gnumake/plugins/state.mk
lib/gnumake/plugins/test.mk
lib/gnumake/util/__gmsl
lib/gnumake/util/gmsl
lib/jinja2/command.snippet.rst.jinja2
lib/jinja2/plugin.index.rst.jinja2
lib/jinja2/plugin.rst.jinja2
lib/jinja2/template.help.jinja2
lib/jinja2/template.index.rst.jinja2
lib/jinja2/template.rst.jinja2
lib/python/moa/__init__.py
lib/python/moa/actor.py
lib/python/moa/commands.py
lib/python/moa/exceptions.py
lib/python/moa/job.py
lib/python/moa/jobConf.py
lib/python/moa/logger.py
lib/python/moa/script.py
lib/python/moa/sysConf.py
lib/python/moa/ui.py
lib/python/moa/utils.py
lib/python/moa/version.py
lib/python/moa.egg-info/PKG-INFO
lib/python/moa.egg-info/SOURCES.txt
lib/python/moa.egg-info/dependency_links.txt
lib/python/moa.egg-info/requires.txt
lib/python/moa.egg-info/top_level.txt
lib/python/moa/backend/__init__.py
lib/python/moa/backend/nojob.py
lib/python/moa/backend/gnumake/__init__.py
lib/python/moa/backend/ruff/__init__.py
lib/python/moa/backend/ruff/base.py
lib/python/moa/backend/ruff/commands.py
lib/python/moa/backend/ruff/map.py
lib/python/moa/backend/ruff/reduce.py
lib/python/moa/backend/ruff/simple.py
lib/python/moa/backend/ruff/test.py
lib/python/moa/plugin/__init__.py
lib/python/moa/template/__init__.py
lib/python/moa/template/template.py
lib/python/moa/template/provider/__init__.py
lib/python/moa/template/provider/archive.py
lib/python/moa/template/provider/archive_global.py
lib/python/moa/template/provider/core.py
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lib/ruff/snippets.jinja2
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share/test/reads_1.fq
share/test/reads_2.fq
share/test/test.fasta
template2/abyss_pe.jinja2
template2/abyss_pe.moa
template2/abyss_se.jinja2
template2/abyss_se.moa
template2/adhoc.mk
template2/adhoc.moa
template2/bamextract.jinja2
template2/bamextract.mk
template2/bamextract.moa
template2/bartab.mk
template2/bartab.moa
template2/bdbb.jinja2
template2/bdbb.moa
template2/bfast_aln.jinja2
template2/bfast_aln.moa
template2/bfast_db.jinja2
template2/bfast_db.moa
template2/blast.jinja2
template2/blast.moa
template2/blastdb.jinja2
template2/blastdb.moa
template2/blat.mk
template2/blat.moa
template2/bowtie.jinja2
template2/bowtie.moa
template2/bowtie_pe.finish.jinja2
template2/bowtie_pe.jinja2
template2/bowtie_pe.moa
template2/bowtie_pe.report.jinja2
template2/bowtie_se.jinja2
template2/bowtie_se.moa
template2/bowtiedb.jinja2
template2/bowtiedb.moa
template2/bwa_aln.jinja2
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template2/bwa_index.jinja2
template2/bwa_index.moa
template2/bwa_sampe.jinja2
template2/bwa_sampe.moa
template2/bwa_sampe.report.jinja2
template2/bwa_samse.jinja2
template2/bwa_samse.moa
template2/cdsmatrix.jinja2
template2/cdsmatrix.moa
template2/cleanFasta.mk
template2/cleanFasta.moa
template2/clustalgroup.mk
template2/clustalgroup.moa
template2/clustalpair.mk
template2/clustalpair.moa
template2/clustalw.mk
template2/clustalw.moa
template2/concatenate.mk
template2/concatenate.moa
template2/dottup.mk
template2/dottup.moa
template2/empty.jinja2
template2/empty.moa
template2/fasta2gff.mk
template2/fasta2gff.moa
template2/fastainfo.moa
template2/fastqc.jinja2
template2/fastqc.moa
template2/fastx_clipper.jinja2
template2/fastx_clipper.moa
template2/fastx_qual_stats.jinja2
template2/fastx_qual_stats.moa
template2/gather.mk
template2/gather.moa
template2/genemarks.jinja2
template2/genemarks.moa
template2/getorf.mk
template2/getorf.moa
template2/glimmer3.jinja2
template2/glimmer3.mk
template2/glimmer3.moa
template2/gmap.jinja2
template2/gmap.mk
template2/gmap.moa
template2/gmapdb.jinja2
template2/gmapdb.moa
template2/gsMapper.jinja2
template2/gsMapper.mk
template2/gsMapper.moa
template2/h_blast.mk
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template2/hagfish.circos.jinja2
template2/hagfish.clean.jinja2
template2/hagfish.combine.jinja2
template2/hagfish.finish.jinja2
template2/hagfish.moa
template2/hagfish.report.jinja2
template2/hagfish.run.jinja2
template2/hagfish.run2.jinja2
template2/kanga.jinja2
template2/kanga.moa
template2/kangar_pe.jinja2
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template2/kangar_se.jinja2
template2/kangar_se.moa
template2/kangax.jinja2
template2/kangax.moa
template2/lftp.mk
template2/lftp.moa
template2/map.jinja2
template2/map.moa
template2/map2.jinja2
template2/map2.moa
template2/map22.jinja2
template2/map22.moa
template2/maq_fasta2bfa.mk
template2/maq_fasta2bfa.moa
template2/maq_fastq2bfq.mk
template2/maq_fastq2bfq.moa
template2/maq_match_pair.mk
template2/maq_match_pair.moa
template2/maq_pe.jinja2
template2/maq_pe.moa
template2/maq_se.jinja2
template2/maq_se.moa
template2/moatest.mk
template2/moatest.moa
template2/mummer.jinja2
template2/mummer.moa
template2/ncbi.jinja2
template2/ncbi.mk
template2/ncbi.moa
template2/newbler.mk
template2/newbler.moa
template2/nstretch.mk
template2/nstretch.moa
template2/orthomcl.jinja2
template2/orthomcl.moa
template2/pregap.mk
template2/pregap.moa
template2/project.moa
template2/reduce.jinja2
template2/reduce.moa
template2/sam2bam.mk
template2/sam2bam.moa
template2/samtools_pileup.jinja2
template2/samtools_pileup.moa
template2/sffinfo.mk
template2/sffinfo.moa
template2/simple.jinja2
template2/simple.moa
template2/soapdenovo_pe.jinja2
template2/soapdenovo_pe.moa
template2/statsidx.jinja2
template2/statsidx.moa
template2/sync.jinja2
template2/sync.moa
template2/unittest.jinja2
template2/unittest.moa
template2/varscan.mk
template2/varscan.moa
template2/vpcr.mk
template2/vpcr.moa
template2/vpcr_list.mk
template2/vpcr_list.moa
template2/wget.jinja2
template2/wget.moa
test/test_doctest.py
test/test_scripts.py
test/test_templates.py
www/cgi/api.cgi
www/cgi/indexHeader.cgi
www/html/indexFooter.html
www/html/css/jqModal.css
www/html/css/jquery-ui-1.8.2.custom.css
www/html/css/jquery.lightbox-0.5.css
www/html/css/jquery.pagination.css
www/html/css/moa.css
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www/html/js/jquery.js
www/html/js/jquery.lightbox-0.5.min.js
www/html/js/jquery.menu.js
www/html/js/jquery.pagination.js
www/html/js/micro.template.js
www/jinja2/Moa.html
www/jinja2/base.html
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www/jinja2/document.ready.js
www/jinja2/menu.moa.html
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