# Python
__pycache__/
*.pyc
*.egg-info/
.eggs/
dist/
build/

# Environment
.env
.venv/
venv/

# Data (large downloaded files — top-level only)
/data/
*.csv
*.tsv
*.h5
*.parquet

# IDE
.vscode/
.idea/
*.swp

# OS
.DS_Store

# ct runtime
.ct/
outputs/

# Test workspace
cttest/

reports/
exports/
busco_downloads/
*.faa
*.mafft
*.clipkit.treefile
*.clipkit.bionj
*.clipkit.ckp.gz
*.clipkit.iqtree
*.clipkit.log
*.clipkit.mldist
*.clipkit.model.gz
*.mafft.clipkit
.env
.claude/worktrees/




.vercel
