LICENSE
MANIFEST
README.md
setup.cfg
setup.py
OCAT/__init__.py
OCAT/example.cpython-37m-x86_64-linux-gnu.so
OCAT/example.pyx
OCAT/fast_similarity_matching.py
OCAT/lineage.py
OCAT/marker_gene.py
OCAT/sparse_encoding.py
OCAT/utils.py
OCAT.egg-info/PKG-INFO
OCAT.egg-info/SOURCES.txt
OCAT.egg-info/dependency_links.txt
OCAT.egg-info/requires.txt
OCAT.egg-info/top_level.txt
img/Figure1_update.png
img/marker_gene_JAN31.png
img/zeisel_August13.png
vignettes/Clustering/README.md
vignettes/Clustering/Test_5_Zeisel.mat
vignettes/Clustering/Zeisel_2015_clustering.ipynb
vignettes/Clustering/Zeisel_clustering_v2.png
vignettes/Integration/Pancreas_integration.ipynb
vignettes/Integration/README.md
vignettes/Integration/pancreas_integration.png
vignettes/Spatial/OCAT_spatial_v3.png
vignettes/Spatial/README.md
vignettes/Spatial/brain_spatial.npz
vignettes/trajectory/Trajectory_tutorial.md