.bumpversion.cfg
.coveragerc
.editorconfig
AUTHORS.rst
CHANGELOG.rst
LICENSE
LICENSE.LESSER
MANIFEST.in
README.rst
TODO.rst
requirements.txt
setup.cfg
setup.py
tox.ini
docs/NONMEM.rst
docs/Pharmpy_logo.svg
docs/changelog.rst
docs/conf.py
docs/data.rst
docs/design.rst
docs/development.rst
docs/frem.rst
docs/getting_started.rst
docs/index.rst
docs/installation.rst
docs/license.rst
docs/model.rst
docs/post-apidoc.sh
docs/requirements.txt
docs/spelling_wordlist.txt
docs/todo.rst
docs/user_guide.rst
docs/version.rst
src/pharmpy/__init__.py
src/pharmpy/__main__.py
src/pharmpy/cli.py
src/pharmpy/config.py
src/pharmpy/data_structures.py
src/pharmpy/math.py
src/pharmpy/model.py
src/pharmpy/model_factory.py
src/pharmpy/parameter.py
src/pharmpy/parameter_sampling.py
src/pharmpy/random_variables.py
src/pharmpy/results.py
src/pharmpy/source.py
src/pharmpy/statements.py
src/pharmpy/tasks.py
src/pharmpy/visualization.py
src/pharmpy.egg-info/PKG-INFO
src/pharmpy.egg-info/SOURCES.txt
src/pharmpy.egg-info/dependency_links.txt
src/pharmpy.egg-info/entry_points.txt
src/pharmpy.egg-info/not-zip-safe
src/pharmpy.egg-info/requires.txt
src/pharmpy.egg-info/top_level.txt
src/pharmpy/data/__init__.py
src/pharmpy/data/data_frame.py
src/pharmpy/data/iterators.py
src/pharmpy/data/read.py
src/pharmpy/execute/__init__.py
src/pharmpy/execute/engine.py
src/pharmpy/execute/environment.py
src/pharmpy/execute/job.py
src/pharmpy/execute/run_directory.py
src/pharmpy/methods/__init__.py
src/pharmpy/methods/bootstrap/__init__.py
src/pharmpy/methods/bootstrap/results.py
src/pharmpy/methods/frem/__init__.py
src/pharmpy/methods/frem/method.py
src/pharmpy/methods/frem/models.py
src/pharmpy/methods/frem/report.rst
src/pharmpy/methods/frem/results.py
src/pharmpy/parse_utils/__init__.py
src/pharmpy/parse_utils/generic.py
src/pharmpy/parse_utils/prettyprint.py
src/pharmpy/parse_utils/treeprint.py
src/pharmpy/plugins/utils.py
src/pharmpy/plugins/nonmem/__init__.py
src/pharmpy/plugins/nonmem/engine.py
src/pharmpy/plugins/nonmem/exceptions.py
src/pharmpy/plugins/nonmem/model.py
src/pharmpy/plugins/nonmem/nmtran_parser.py
src/pharmpy/plugins/nonmem/results.py
src/pharmpy/plugins/nonmem/results_file.py
src/pharmpy/plugins/nonmem/table.py
src/pharmpy/plugins/nonmem/records/__init__.py
src/pharmpy/plugins/nonmem/records/code_record.py
src/pharmpy/plugins/nonmem/records/data_record.py
src/pharmpy/plugins/nonmem/records/etas_record.py
src/pharmpy/plugins/nonmem/records/factory.py
src/pharmpy/plugins/nonmem/records/omega_record.py
src/pharmpy/plugins/nonmem/records/option_record.py
src/pharmpy/plugins/nonmem/records/parsers.py
src/pharmpy/plugins/nonmem/records/problem_record.py
src/pharmpy/plugins/nonmem/records/raw_record.py
src/pharmpy/plugins/nonmem/records/record.py
src/pharmpy/plugins/nonmem/records/theta_record.py
src/pharmpy/plugins/nonmem/records/grammars/code_record.lark
src/pharmpy/plugins/nonmem/records/grammars/data_record.lark
src/pharmpy/plugins/nonmem/records/grammars/definitions.lark
src/pharmpy/plugins/nonmem/records/grammars/omega_record.lark
src/pharmpy/plugins/nonmem/records/grammars/option_record.lark
src/pharmpy/plugins/nonmem/records/grammars/problem_record.lark
src/pharmpy/plugins/nonmem/records/grammars/theta_record.lark
src/pharmpy/reporting/conf.py
src/pharmpy/reporting/reporting.py
src/pharmpy/workflows/bootstrap.py
src/pharmpy/workflows/jobs.py
src/pharmpy/workflows/modelfit.py
src/pharmpy_core.egg-info/PKG-INFO
src/pharmpy_core.egg-info/SOURCES.txt
src/pharmpy_core.egg-info/dependency_links.txt
src/pharmpy_core.egg-info/entry_points.txt
src/pharmpy_core.egg-info/not-zip-safe
src/pharmpy_core.egg-info/requires.txt
src/pharmpy_core.egg-info/top_level.txt
tests/conftest.py
tests/test_config.py
tests/test_math.py
tests/test_model.py
tests/test_parameter.py
tests/test_parameter_sampling.py
tests/test_plugins.py
tests/test_random_variables.py
tests/test_statements.py
tests/data/test_data_frame.py
tests/data/test_iterators.py
tests/data/test_read.py
tests/generic/test_parse_utils.py
tests/generic/execute/conftest.py
tests/generic/execute/test_environment.py
tests/generic/execute/test_job.py
tests/generic/execute/test_run_directory.py
tests/methods/test_bootstrap.py
tests/methods/test_frem.py
tests/nonmem/conftest.py
tests/nonmem/test_input.py
tests/nonmem/test_modelfit_results.py
tests/nonmem/test_nonmem_model.py
tests/nonmem/test_nonmem_table.py
tests/nonmem/test_parser.py
tests/nonmem/execute/test_nonmem_execute.py
tests/nonmem/output/test_nonmem_results_file.py
tests/nonmem/records/conftest.py
tests/nonmem/records/test_code.py
tests/nonmem/records/test_data.py
tests/nonmem/records/test_etas.py
tests/nonmem/records/test_factory.py
tests/nonmem/records/test_omega.py
tests/nonmem/records/test_option_record.py
tests/nonmem/records/test_problem.py
tests/nonmem/records/test_theta.py
tests/testdata/pheno_data.csv
tests/testdata/nonmem/minimal.mod
tests/testdata/nonmem/pheno.dta
tests/testdata/nonmem/pheno_etas.mod
tests/testdata/nonmem/pheno_real.coi
tests/testdata/nonmem/pheno_real.cor
tests/testdata/nonmem/pheno_real.cov
tests/testdata/nonmem/pheno_real.ext
tests/testdata/nonmem/pheno_real.lst
tests/testdata/nonmem/pheno_real.mod
tests/testdata/nonmem/pheno_real.phi
tests/testdata/nonmem/pheno_real.tab
tests/testdata/nonmem/pheno_real.xml
tests/testdata/nonmem/frem/pheno/frem_dataset.dta
tests/testdata/nonmem/frem/pheno/model_3.ext
tests/testdata/nonmem/frem/pheno/model_3.lst
tests/testdata/nonmem/frem/pheno/model_3.mod
tests/testdata/nonmem/frem/pheno/model_3.phi
tests/testdata/nonmem/frem/pheno/model_4.cov
tests/testdata/nonmem/frem/pheno/model_4.ext
tests/testdata/nonmem/frem/pheno/model_4.lst
tests/testdata/nonmem/frem/pheno/model_4.mod
tests/testdata/nonmem/frem/pheno/model_4.phi
tests/testdata/nonmem/frem/pheno_cat/frem_dataset.dta
tests/testdata/nonmem/frem/pheno_cat/model_4.cor
tests/testdata/nonmem/frem/pheno_cat/model_4.cov
tests/testdata/nonmem/frem/pheno_cat/model_4.ext
tests/testdata/nonmem/frem/pheno_cat/model_4.lst
tests/testdata/nonmem/frem/pheno_cat/model_4.mod
tests/testdata/nonmem/frem/pheno_cat/model_4.phi
tests/testdata/nonmem/frem/pheno_cat/model_4_input.phi