Metadata-Version: 2.1
Name: pdm-utils
Version: 0.9.26
Summary: MySQL phage genomics database management utilities
Home-page: https://github.com/SEA-PHAGES/pdm_utils
Author: Christian Gauthier
Author-email: chg60@pitt.edu
Project-URL: Documentation, https://pdm-utils.readthedocs.io/en/latest/
Project-URL: Source, https://github.com/SEA-PHAGES/pdm_utils/
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: MacOS
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Requires-Python: >=3.7
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: biopython (==1.77)
Requires-Dist: networkx (>=2.4)
Requires-Dist: paramiko (>=2.7.2)
Requires-Dist: phammseqs (>=1.0.4)
Requires-Dist: pymysql (==0.9.3)
Requires-Dist: pyyaml (>=5.3.1)
Requires-Dist: sqlalchemy (==1.4.2)
Requires-Dist: tabulate (>=0.8.3)
Requires-Dist: urllib3 (>=1.25.8)

# README #

### Purpose: ###

* The pdm_utils repository provides the source code for pdm_utils Python package, developed in the SEA-PHAGES program to create, update, and maintain MySQL phage genomics databases.

The source code is available on GitHub at https://github.com/SEA-PHAGES/pdm_utils/.

The user guide for the package is available on ReadTheDocs at https://pdm-utils.readthedocs.io/en/latest/.

The pdm_utils Python package is available on PyPI at https://pypi.org/project/pdm-utils/.

### Contribution guidelines: ###

* Please contact us if you have any contributions or suggestions. Details about how to contribute can be found on the user guide.

### Developers: ###

* Travis Mavrich (trm53@pitt.edu) and Christian Gauthier (christian.gauthier@pitt.edu).
