CODE_OF_CONDUCT.md
LICENSE
MANIFEST.in
README.md
requirements.txt
requirements_docs.txt
setup.cfg
setup.py
pept/__init__.py
pept/__version__.py
pept.egg-info/PKG-INFO
pept.egg-info/SOURCES.txt
pept.egg-info/dependency_links.txt
pept.egg-info/requires.txt
pept.egg-info/top_level.txt
pept/base/__init__.py
pept/base/iterable_samples.py
pept/base/line_data.py
pept/base/point_data.py
pept/base/voxel_data.py
pept/cookbook/__init__.py
pept/cookbook/peptml.py
pept/diagnostics/__init__.py
pept/scanners/__init__.py
pept/scanners/modular_camera/__init__.py
pept/scanners/modular_camera/modular_camera.py
pept/scanners/modular_camera/extensions/get_pept_event.c
pept/scanners/modular_camera/extensions/get_pept_event.pyx
pept/scanners/modular_camera/extensions/get_pept_event_ext.c
pept/scanners/modular_camera/extensions/get_pept_event_ext.h
pept/scanners/parallel_screens/__init__.py
pept/scanners/parallel_screens/parallel_screens.py
pept/simulation/__init__.py
pept/simulation/peptsim.py
pept/tests/unit/test_base_classes.py
pept/tracking/__init__.py
pept/tracking/birmingham_method/__init__.py
pept/tracking/birmingham_method/birmingham_method.py
pept/tracking/birmingham_method/extensions/birmingham_method.c
pept/tracking/birmingham_method/extensions/birmingham_method.pyx
pept/tracking/birmingham_method/extensions/birmingham_method_ext.c
pept/tracking/birmingham_method/extensions/birmingham_method_ext.h
pept/tracking/peptml/__init__.py
pept/tracking/peptml/cutpoints.py
pept/tracking/peptml/peptml.py
pept/tracking/trajectory_separation/__init__.py
pept/tracking/trajectory_separation/distance_matrix_reachable.c
pept/tracking/trajectory_separation/distance_matrix_reachable.pyx
pept/tracking/trajectory_separation/tco.py
pept/tracking/trajectory_separation/trajectory_separation.py
pept/utilities/__init__.py
pept/utilities/cutpoints/__init__.py
pept/utilities/cutpoints/find_cutpoints.c
pept/utilities/cutpoints/find_cutpoints.pyx
pept/utilities/misc/__init__.py
pept/utilities/misc/aggregate.py
pept/utilities/misc/read_csv.py
pept/utilities/parallel/__init__.py
pept/utilities/parallel/parallel_map.py
pept/utilities/traverse/__init__.py
pept/utilities/traverse/traverse2d.c
pept/utilities/traverse/traverse2d.pyx
pept/utilities/traverse/traverse3d.c
pept/utilities/traverse/traverse3d.pyx
pept/visualisation/__init__.py
pept/visualisation/plotly_grapher.py