Metadata-Version: 2.1
Name: ontobio
Version: 2.9.0
Summary: Library for working with OBO Library Ontologies and associations
Home-page: https://github.com/biolink/ontobio
Author: Chris Mungall
Author-email: cmungall@gmail.com
License: BSD
Keywords: ontology graph obo owl sparql networkx network
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: License :: OSI Approved :: BSD License
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering :: Visualization
License-File: LICENSE
Requires-Dist: rdflib >=6.0.0
Requires-Dist: marshmallow <4.0,>=3.0.0b11
Requires-Dist: jsobject >=0.0
Requires-Dist: prefixcommons >=0.1.9
Requires-Dist: requests >=0.0
Requires-Dist: pip >=9.0.1
Requires-Dist: wheel >0.25.0
Requires-Dist: pysolr >=3.6.0
Requires-Dist: networkx >=2.3
Requires-Dist: matplotlib >=2.0.0
Requires-Dist: SPARQLWrapper >=1.8.0
Requires-Dist: pandas >=0.0
Requires-Dist: scipy >=1.2.0
Requires-Dist: twine
Requires-Dist: jsonpickle >=0.0
Requires-Dist: jsonpath-rw >=0.0
Requires-Dist: PyShEx >=0.7.11
Requires-Dist: pytest >=0.0
Requires-Dist: pytest-logging >=0.0
Requires-Dist: pydotplus >=0.0
Requires-Dist: plotly >=2.0.7
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Requires-Dist: python-dateutil
Requires-Dist: chardet
Requires-Dist: dacite >=1.6.0
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Provides-Extra: dev
Requires-Dist: plotly ; extra == 'dev'
Provides-Extra: test
Requires-Dist: pytest ; extra == 'test'

|PyPI|

ontobio - a python API for working with ontologies and associations
===================================================================

This module provides objects and utility methods for working with
ontologies and associations of entities (genes, variants, etc) to
ontology classes.

The ontologies and associations can either be local files or provided by
remote services (currently the OntoBee SPARQL service for ontologies and
a Monarch or GO Golr service for associations).

Documentation
=============

Documentation is on `readthedocs <https://ontobio.readthedocs.io>`__

Notebooks
=========

See the `Jupyter
Notebooks <http://nbviewer.jupyter.org/github/biolink/ontobio/tree/master/notebooks/>`__
for code examples

Mailing list
============

-  `biolink-api google
   group <https://groups.google.com/forum/#!forum/biolink-api>`__

.. |PyPI| image:: https://img.shields.io/pypi/v/ontobio.svg
   :target: https://pypi.python.org/pypi/ontobio
   
   
