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.gitignore
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AUTHORS.md
CHANGELOG.md
CONTRIBUTING.md
LICENSE.txt
README.md
pyproject.toml
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tox.ini
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docs/Makefile
docs/authors.md
docs/changelog.md
docs/conf.py
docs/contributing.md
docs/index.md
docs/license.md
docs/readme.md
docs/requirements.txt
docs/_static/.gitignore
src/SpatialExperiment.egg-info/PKG-INFO
src/SpatialExperiment.egg-info/SOURCES.txt
src/SpatialExperiment.egg-info/dependency_links.txt
src/SpatialExperiment.egg-info/not-zip-safe
src/SpatialExperiment.egg-info/requires.txt
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src/spatialexperiment/ProxySFE.py
src/spatialexperiment/SpatialExperiment.py
src/spatialexperiment/SpatialImage.py
src/spatialexperiment/__init__.py
src/spatialexperiment/_combineutils.py
src/spatialexperiment/_imgutils.py
src/spatialexperiment/_initutils.py
src/spatialexperiment/_validators.py
src/spatialexperiment/io/__init__.py
src/spatialexperiment/io/tenx_visium.py
tests/conftest.py
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tests/test_pSFE.py
tests/test_read_tenx_visium.py
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tests/test_spe_column_data.py
tests/test_spe_combine.py
tests/test_spe_methods.py
tests/test_spe_subset.py
tests/test_spi.py
tests/10xVisium/section1/outs/raw_feature_bc_matrix/barcodes.tsv
tests/10xVisium/section1/outs/raw_feature_bc_matrix/features.tsv
tests/10xVisium/section1/outs/raw_feature_bc_matrix/matrix.mtx
tests/10xVisium/section1/outs/spatial/scalefactors_json.json
tests/10xVisium/section1/outs/spatial/tissue_lowres_image.png
tests/10xVisium/section1/outs/spatial/tissue_positions_list.csv
tests/10xVisium/section2/outs/raw_feature_bc_matrix/barcodes.tsv
tests/10xVisium/section2/outs/raw_feature_bc_matrix/features.tsv
tests/10xVisium/section2/outs/raw_feature_bc_matrix/matrix.mtx
tests/10xVisium/section2/outs/spatial/scalefactors_json.json
tests/10xVisium/section2/outs/spatial/tissue_lowres_image.png
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tests/images/sample_image1.jpg
tests/images/sample_image2.png
tests/images/sample_image3.jpg
tests/images/sample_image4.png