from covid_shared.cli_tools.decorators import (
    add_verbose,
    add_with_debugger,
    add_verbose_and_with_debugger,
    pass_run_metadata,
    with_output_root,
    with_mark_best,
    with_production_tag,
    add_output_options,
    add_r_singularity_option,
    add_mobility_gpr_dependency_option,
    add_model_inputs_dependency_option,
    add_seir_covariates_dependency_option,
    add_snapshot_dependency_option,
)
from covid_shared.cli_tools.logging import (
    LOG_FORMATS,
    DEFAULT_LOG_MESSAGING_FORMAT,
    add_logging_sink,
    configure_logging_to_files,
    configure_logging_to_terminal,
)
from covid_shared.cli_tools.metadata import (
    Metadata,
    RunMetadata,
    YamlIOMixin,
    get_function_full_argument_mapping,
    monitor_application,
    handle_exceptions,
    update_with_previous_metadata,
)
from covid_shared.cli_tools.run_directory import (
    get_last_stage_directory,
    get_current_previous_version,
    get_run_directory,
    make_links,
    make_run_directory,
    mark_best,
    mark_best_explicit,
    mark_explicit,
    mark_latest,
    mark_latest_explicit,
    mark_production,
    mark_production_explicit,
    move_link,
    setup_directory_structure,
)
from covid_shared.cli_tools.cleanup import (
    finish_application,
)
from covid_shared.cli_tools.validation import (
    validate_best_and_production_tags,
)
