LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.py
examples/embedding_options.md
examples/model_selection.md
examples/custom_model/create_example_custom_model.py
examples/custom_model/example_sequences.fasta
examples/custom_model/example_substring.csv
examples/custom_model/example_protein_model/config.json
examples/custom_model/example_protein_model/pytorch_model.pt
examples/custom_model/example_protein_model/special_tokens_map.json
examples/custom_model/example_protein_model/tokenizer_config.json
examples/custom_model/example_protein_model/vocab.json
examples/custom_model/example_protein_model/vocab.txt
src/pepe/__init__.py
src/pepe/__main__.py
src/pepe/model_selecter.py
src/pepe/parse_arguments.py
src/pepe/utils.py
src/pepe/embedders/__init__.py
src/pepe/embedders/base_embedder.py
src/pepe/embedders/custom_embedder.py
src/pepe/embedders/esm_embedder.py
src/pepe/embedders/huggingface_embedder.py
src/pepe_cli.egg-info/PKG-INFO
src/pepe_cli.egg-info/SOURCES.txt
src/pepe_cli.egg-info/dependency_links.txt
src/pepe_cli.egg-info/entry_points.txt
src/pepe_cli.egg-info/requires.txt
src/pepe_cli.egg-info/top_level.txt
src/tests/__init__.py
src/tests/test_run.py