LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
PyMLST.egg-info/PKG-INFO
PyMLST.egg-info/SOURCES.txt
PyMLST.egg-info/dependency_links.txt
PyMLST.egg-info/entry_points.txt
PyMLST.egg-info/requires.txt
PyMLST.egg-info/top_level.txt
pymlst/__init__.py
pymlst/cmd.py
pymlst/config.py
pymlst/version.py
pymlst/cla/__init__.py
pymlst/cla/core.py
pymlst/cla/model.py
pymlst/cla/commands/__init__.py
pymlst/cla/commands/create.py
pymlst/cla/commands/import.py
pymlst/cla/commands/remove.py
pymlst/cla/commands/search.py
pymlst/cla/commands/search2.py
pymlst/common/__init__.py
pymlst/common/blat.py
pymlst/common/exceptions.py
pymlst/common/flag.py
pymlst/common/kma.py
pymlst/common/mafft.py
pymlst/common/psl.py
pymlst/common/utils.py
pymlst/common/web.py
pymlst/common/commands/__init__.py
pymlst/common/commands/configure.py
pymlst/data/alembic/alembic.ini
pymlst/data/alembic/cla/env.py
pymlst/data/alembic/cla/script.py.mako
pymlst/data/alembic/cla/versions/21efe503d07d_initial.py
pymlst/data/alembic/wg/env.py
pymlst/data/alembic/wg/script.py.mako
pymlst/data/alembic/wg/versions/52ae99cb5f33_initial.py
pymlst/wg/__init__.py
pymlst/wg/core.py
pymlst/wg/extractors.py
pymlst/wg/model.py
pymlst/wg/commands/__init__.py
pymlst/wg/commands/add.py
pymlst/wg/commands/add2.py
pymlst/wg/commands/create.py
pymlst/wg/commands/distance.py
pymlst/wg/commands/gene.py
pymlst/wg/commands/import.py
pymlst/wg/commands/mlst.py
pymlst/wg/commands/msa.py
pymlst/wg/commands/recombination.py
pymlst/wg/commands/remove.py
pymlst/wg/commands/sequence.py
pymlst/wg/commands/stats.py
pymlst/wg/commands/strain.py
pymlst/wg/commands/subgraph.py
tests/test_cla.py
tests/test_wg.py