from .graph_operations import (
    cleanup,
    getpath,
    subset_tree,
    attach_tree,
    extend_tips,
    simplify,
)
from .graph_fitting import tree, curve, circle
from .root import root, roots
from .pseudotime import pseudotime, rename_milestones
from .test_association import test_association
from .fit import fit
from .cluster import cluster
from .slide_cors import slide_cells, slide_cors
from .correlation_tools import (
    synchro_path,
    synchro_path_multi,
    module_inclusion,
)
from .bifurcation_tools import test_fork, branch_specific, activation, activation_lm

# from .activation_tools import activation, activation_lm
from .conversion import cellrank_to_tree
from .linearity_deviation import linearity_deviation
from .dendrogram import dendrogram
