MANIFEST.in
README.md
pyproject.toml
setup.py
pat2vec/__init__.py
pat2vec/main_pat2vec.py
pat2vec.egg-info/PKG-INFO
pat2vec.egg-info/SOURCES.txt
pat2vec.egg-info/dependency_links.txt
pat2vec.egg-info/requires.txt
pat2vec.egg-info/top_level.txt
pat2vec/pat2vec_get_methods/__init__.py
pat2vec/pat2vec_get_methods/get_method_appointments.py
pat2vec/pat2vec_get_methods/get_method_bed.py
pat2vec/pat2vec_get_methods/get_method_bloods.py
pat2vec/pat2vec_get_methods/get_method_bmi.py
pat2vec/pat2vec_get_methods/get_method_core02.py
pat2vec/pat2vec_get_methods/get_method_core_resus.py
pat2vec/pat2vec_get_methods/get_method_covid.py
pat2vec/pat2vec_get_methods/get_method_current_pat_annotations_mrc_cs.py
pat2vec/pat2vec_get_methods/get_method_demo.py
pat2vec/pat2vec_get_methods/get_method_demographics.py
pat2vec/pat2vec_get_methods/get_method_diagnostics.py
pat2vec/pat2vec_get_methods/get_method_drugs.py
pat2vec/pat2vec_get_methods/get_method_hosp_site.py
pat2vec/pat2vec_get_methods/get_method_news.py
pat2vec/pat2vec_get_methods/get_method_pat_annotations.py
pat2vec/pat2vec_get_methods/get_method_report_annotations.py
pat2vec/pat2vec_get_methods/get_method_smoking.py
pat2vec/pat2vec_get_methods/get_method_textual_obs_annotations.py
pat2vec/pat2vec_get_methods/get_method_vte_status.py
pat2vec/pat2vec_main_methods/__init__.py
pat2vec/pat2vec_main_methods/main_batch.py
pat2vec/pat2vec_pat_list/__init__.py
pat2vec/pat2vec_pat_list/get_patient_treatment_list.py
pat2vec/pat2vec_search/cogstack_search_methods.py
pat2vec/pat2vec_search/data_helper_functions.py
pat2vec/pat2vec_search/matcher.py
pat2vec/pat2vec_search/nearest.py
pat2vec/pat2vec_search/search_helper_functions.py
pat2vec/pat2vec_search/search_multiprocess.py
pat2vec/patvec_get_batch_methods/__init__.py
pat2vec/patvec_get_batch_methods/get_merged_batches.py
pat2vec/patvec_get_batch_methods/get_prefetch_batches.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_appointments.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_bloods.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_bmi.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_demo.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_diagnostics.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_drugs.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_epr_docs.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_epr_docs_annotations.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_mct_docs.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_mct_docs_annotations.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_news.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_obs.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_reports.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_reports_docs_annotations.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_textual_obs_annotations.py
pat2vec/patvec_get_batch_methods/main_get_pat_batch_textual_obs_docs.py
pat2vec/tests/config_pat2vec.py
pat2vec/tests/test_calculate_interval.py
pat2vec/tests/test_config_class.py
pat2vec/tests/test_database_backend.py
pat2vec/tests/test_filter_dataframe_by_timestamp_extended.py
pat2vec/tests/test_generate_date_list.py
pat2vec/tests/test_get_dummy_data_cohort_searcher_get_date.py
pat2vec/tests/test_get_method_bloods.py
pat2vec/tests/test_get_start_end_year_month.py
pat2vec/tests/test_global_date_validation.py
pat2vec/tests/test_individual_patient_window.py
pat2vec/tests/test_integration_data_integrity.py
pat2vec/tests/test_methods_annotation_filter_annot_dataframe.py
pat2vec/tests/test_methods_annotation_multi_annots_to_df.py
pat2vec/tests/test_methods_get.py
pat2vec/tests/test_parse_date.py
pat2vec/tests/test_pat_maker_full_flow.py
pat2vec/tests/test_post_processing_build_ipw_dataframe.py
pat2vec/tests/test_post_processing_get_pat_ipw_record.py
pat2vec/tests/test_post_processing_process_csv_files.py
pat2vec/util/__init__.py
pat2vec/util/anonymisation_data_methods.py
pat2vec/util/anonymisation_deid_documents.py
pat2vec/util/calculate_interval.py
pat2vec/util/clinical_note_splitter.py
pat2vec/util/compile_requirements.py
pat2vec/util/config_pat2vec.py
pat2vec/util/credentials.py
pat2vec/util/current_pat_batch_path_methods.py
pat2vec/util/elasticsearch_methods.py
pat2vec/util/ethnicity_abstractor.py
pat2vec/util/evaluation_methods.py
pat2vec/util/evaluation_methods_ploting.py
pat2vec/util/filter_dataframe_by_timestamp.py
pat2vec/util/filter_methods.py
pat2vec/util/generate_date_list.py
pat2vec/util/get_best_gpu.py
pat2vec/util/get_dummy_data_cohort_searcher.py
pat2vec/util/get_dummy_data_medcat_annotation.py
pat2vec/util/get_method_default_fields_map.py
pat2vec/util/get_method_index_map.py
pat2vec/util/get_start_end_year_month.py
pat2vec/util/helper_functions.py
pat2vec/util/impute_data_for_pipe.py
pat2vec/util/logger_setup.py
pat2vec/util/medcat_misc_methods.py
pat2vec/util/methods_annotation.py
pat2vec/util/methods_annotation_filter_annot_dataframe.py
pat2vec/util/methods_annotation_get_pat_document_annotation_batch.py
pat2vec/util/methods_annotation_json_to_dataframe.py
pat2vec/util/methods_annotation_multi_annots_to_df.py
pat2vec/util/methods_annotation_regex.py
pat2vec/util/methods_get.py
pat2vec/util/methods_get_medcat.py
pat2vec/util/methods_post_get.py
pat2vec/util/migrate_to_db.py
pat2vec/util/parse_date.py
pat2vec/util/post_processing.py
pat2vec/util/post_processing_build_ipw_dataframe.py
pat2vec/util/post_processing_build_methods.py
pat2vec/util/post_processing_get_pat_ipw_record.py
pat2vec/util/post_processing_medcat.py
pat2vec/util/post_processing_process_csv_files.py
pat2vec/util/pre_get_drug_treatment_docs.py
pat2vec/util/pre_processing.py
pat2vec/util/presentation_methods.py
pat2vec/util/retrieve_data.py
pat2vec/util/testing_helpers.py
pat2vec/util/dummy_data_files/__init__.py
pat2vec/util/dummy_data_files/dummy_lists.py
pat2vec_env/bin/vba_extract.py